Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-250   PHE-251  3.8 3.7 -4.7 3.1 111.5 108.3 -156.1
 PHE-251   GLY-252  7.5 7.3 -2.2 2.6 175.0 175.9 16.5
 GLY-252   GLN-253  6.9 6.9 2.8 2.7 62.2 60.2 44.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-289   ILE-290  2.2 2.3 -7.7 1.0 65.5 63.3 68.1
 ILE-290   ALA-291  5.7 5.8 -7.1 4.3 5.7 10.2 -0.5
 ALA-291   CYS-292  6.9 6.9 9.5 -3.3 104.2 102.5 33.1
 CYS-292   GLY-293  10.0 10.0 0.6 -10.4 107.8 105.2 10.7
 GLY-293   PRO-294  12.7 12.6 -2.2 12.4 27.3 36.7 -54.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-436   GLU-437  3.9 3.9 1.2 1.7 43.5 44.1 45.6
 GLU-437   VAL-438  7.1 7.0 -4.8 6.4 131.0 132.2 -70.5
 VAL-438   THR-439  5.2 5.1 -5.1 17.6 150.5 147.6 173.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-463   ALA-464  9.1 9.3 7.8 -13.2 101.6 104.5 105.1
 ALA-464   VAL-465  8.0 8.1 5.8 -9.2 44.9 43.9 -41.0
 VAL-465   ILE-466  7.4 7.4 -6.2 11.7 86.5 87.0 108.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees