Maltose-Binding Periplasmic Protein, Histone Deacetylase 6 Chimera

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-459   SER-460  9.3 9.3 6.1 10.3 107.3 106.0 -20.6
 SER-460   GLY-461  10.1 10.2 -49.2 58.0 38.8 52.1 -86.8
 GLY-461   ARG-462  12.1 12.1 -34.5 15.2 24.8 20.2 237.0
 ARG-462   GLN-463  9.6 9.8 -23.7 50.8 57.0 70.9 -69.4
 GLN-463   THR-464  9.9 9.0 6.9 -41.4 50.1 56.2 -222.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-474   ASN-475  12.6 12.7 -16.9 2.0 98.4 103.1 47.4
 ASN-475   ALA-476  10.8 11.3 17.2 -2.0 24.3 21.2 150.1
 ALA-476   ALA-477  12.3 12.7 17.8 -9.3 85.4 88.9 19.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees