Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-13   ILE-14  9.8 10.2 10.6 67.9 27.6 42.4 425.8
 ILE-14   THR-15  10.9 11.1 13.1 -18.9 98.6 101.3 55.3
 THR-15   ILE-16  14.0 14.0 12.5 -9.6 48.0 42.1 -11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-30   HIS-31  3.2 2.8 -24.4 29.1 50.7 46.6 -30.2
 HIS-31   GLU-32  4.9 4.8 -1.1 -4.2 20.8 18.0 27.0
 GLU-32   TYR-33  4.2 4.1 5.6 -5.6 98.9 101.8 7.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-173   ALA-174  15.6 15.6 2.4 17.5 148.6 148.0 -92.5
 ALA-174   ARG-175  16.4 16.1 52.2 -53.8 81.6 77.3 25.2
 ARG-175   ILE-176  15.0 14.7 -58.2 -7.5 33.8 31.3 325.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-286   TYR-287  9.1 8.3 20.0 -10.1 72.4 72.2 16.2
 TYR-287   HIS-288  5.6 5.0 9.8 -6.2 38.3 39.7 5.6
 HIS-288   HIS-289  6.2 5.8 -2.3 2.6 80.4 76.8 14.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees