Large Fragment Of DNA Polymerase I
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-630
VAL-631
9.0
8.8
24.6
-17.2
90.4
92.2
-14.3
VAL-631
PHE-632
5.5
5.1
2.8
3.5
113.4
109.5
-8.3
PHE-632
GLN-633
6.0
5.7
-26.1
23.0
23.7
32.9
7.9
GLN-633
GLU-634
7.9
8.4
-8.1
-6.5
48.7
30.3
18.0
GLU-634
GLY-635
4.7
5.8
0.2
8.3
86.5
90.1
-5.7
GLY-635
ARG-636
3.3
3.4
13.1
-20.4
58.4
78.9
-1.3
ARG-636
ASP-637
0.4
0.6
1.6
49.4
38.2
31.9
66.9
ASP-637
ILE-638
2.4
2.1
18.4
4.4
46.4
43.9
24.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-669
LEU-670
3.3
2.9
-12.1
36.5
93.9
70.8
-9.6
LEU-670
TYR-671
3.1
3.2
-26.6
11.2
28.6
16.1
34.7
TYR-671
GLY-672
3.1
3.2
-76.6
44.5
34.9
63.7
45.7
GLY-672
MET-673
3.6
2.1
44.8
0.4
108.2
112.4
-20.1
MET-673
SER-674
3.6
3.5
-32.2
24.6
79.4
74.5
8.0
SER-674
ALA-675
7.0
6.3
7.0
-5.2
61.2
63.7
1.7
ALA-675
HIS-676
10.4
9.8
11.7
-8.5
113.5
111.8
-1.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees