K42-41l Fab Light Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-104   GLU-105  6.9 7.5 -2.8 -2.1 101.6 102.9 4.7
 GLU-105   LEU-106  5.9 5.8 16.7 10.8 28.8 28.9 120.2
 LEU-106   LYS-107  3.1 3.2 17.4 -1.8 56.3 54.9 -6.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-164   ASP-165  8.5 8.9 11.8 -10.3 122.5 115.0 15.6
 ASP-165   GLN-166  5.3 5.6 -8.9 -0.5 35.3 27.5 48.4
 GLN-166   ASP-167  4.0 4.5 -1.5 -6.8 101.9 97.4 -18.6
 ASP-167   SER-168  5.4 4.8 3.2 7.1 108.6 112.5 -11.5
 SER-168   LYS-169  5.2 4.1 -9.3 -7.8 42.3 33.6 35.3
 LYS-169   ASP-170  7.9 6.6 -20.7 34.0 31.2 37.0 -46.6
 ASP-170   SER-171  6.9 6.8 -4.5 -6.3 87.0 84.5 2.9
 SER-171   THR-172  4.0 4.0 11.4 -12.2 89.1 89.5 11.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees