Amine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-167   GLY-168  8.1 8.1 -3.3 4.2 84.2 83.1 -6.9
 GLY-168   LEU-169  4.4 4.4 2.3 -1.5 50.4 52.1 20.0
 LEU-169   GLN-170  1.6 1.4 -11.1 -2.2 91.1 88.4 72.4
 GLN-170   TYR-171  2.2 2.2 -0.8 1.7 121.5 122.8 10.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-197   GLY-198  13.1 13.7 -0.5 5.3 12.3 9.6 24.3
 GLY-198   PRO-199  12.1 12.9 -35.1 -1.9 58.4 74.5 208.6
 PRO-199   GLY-200  9.7 9.8 166.4 -143.6 75.7 102.5 -28.5
 GLY-200   TRP-201  8.1 8.1 -32.8 0.2 155.2 156.1 -306.7
 TRP-201   THR-202  7.2 7.3 1.8 -28.1 94.8 103.3 24.5
 THR-202   SER-203  3.4 3.9 33.7 11.8 22.8 36.6 220.7
 SER-203   PRO-204  2.2 2.0 5.3 1.3 105.0 106.3 23.7
 PRO-204   THR-205  4.2 4.0 0.2 1.7 90.9 89.8 15.3
 THR-205   SER-206  6.7 6.6 -6.0 -1.9 45.1 48.0 -1.0
 SER-206   TYR-207  6.6 6.7 5.0 2.3 124.6 131.4 -37.2
 TYR-207   PRO-208  9.8 9.6 5.7 -0.8 122.5 119.6 -20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-224   LEU-225  22.7 22.7 1.3 0.9 137.9 136.3 -6.8
 LEU-225   THR-226  20.3 20.4 1.2 1.9 141.1 144.3 -5.3
 THR-226   VAL-227  19.3 19.6 0.5 1.6 104.8 103.5 -23.1
 VAL-227   ILE-228  15.5 15.8 -0.7 0.5 14.6 16.7 9.5
 ILE-228   LYS-229  14.3 14.6 -0.3 2.6 85.2 84.3 -18.2
 LYS-229   THR-230  10.5 10.8 2.6 3.4 25.3 22.8 23.8
 THR-230   GLU-231  7.9 8.4 -3.7 -2.6 67.8 67.6 0.3
 GLU-231   GLU-232  4.7 5.1 -4.9 5.4 145.3 144.2 7.9
 GLU-232   VAL-233  1.6 2.0 -7.1 -0.6 78.5 70.0 40.7
 VAL-233   LYS-234  3.8 3.6 4.5 6.1 48.0 45.6 43.9
 LYS-234   THR-235  4.9 4.9 -6.0 1.3 95.4 91.3 57.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-261   VAL-262  5.0 5.0 0.2 12.5 33.3 33.9 58.9
 VAL-262   THR-263  1.9 1.9 -4.4 -1.4 76.1 74.9 46.6
 THR-263   ALA-264  3.3 3.5 0.0 1.9 44.1 47.7 6.8
 ALA-264   THR-265  4.4 4.7 -2.0 0.5 90.1 88.5 0.9
 THR-265   THR-266  7.8 8.1 -0.7 3.2 126.2 123.1 12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-275   GLU-276  9.0 9.2 -2.0 0.7 143.9 143.1 -1.3
 GLU-276   LYS-277  6.0 6.1 -2.3 -0.4 80.2 77.6 21.6
 LYS-277   GLN-278  3.1 3.3 -0.9 4.2 119.8 119.2 8.9
 GLN-278   VAL-279  0.6 0.5 -8.4 -4.7 94.1 93.9 79.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-288   ASP-289  5.6 5.8 -1.5 -2.1 134.0 131.5 -1.9
 ASP-289   MET-290  3.1 3.3 -3.9 -7.2 82.9 78.4 95.3
 MET-290   VAL-291  0.9 1.0 -5.5 1.1 127.1 127.7 -10.2
 VAL-291   PHE-292  3.9 3.7 -3.6 -1.9 85.8 83.3 22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees