Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-88   ILE-89  4.8 4.1 -10.7 14.8 69.1 66.3 14.0
 ILE-89   ARG-90  1.1 0.5 23.7 -27.1 74.0 78.9 -8.9
 ARG-90   THR-91  3.9 3.3 -13.7 7.3 77.3 73.9 21.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-125   ILE-126  9.4 9.5 17.6 -12.1 125.5 115.7 -4.9
 ILE-126   ASP-127  6.0 6.0 13.2 25.3 43.9 40.6 114.1
 ASP-127   TYR-128  3.2 2.9 -54.7 28.6 90.3 101.7 -26.6
 TYR-128   GLN-129  3.8 4.9 -15.9 -16.2 61.6 59.4 107.9
 TYR-128   GLN-129  3.8 4.9 -15.9 -16.2 61.6 59.4 107.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-128   GLN-129  3.8 4.9 -15.9 -16.2 61.6 59.4 107.9
 TYR-128   GLN-129  3.8 4.9 -15.9 -16.2 61.6 59.4 107.9
 GLN-129   ASN-130  6.4 7.1 18.6 9.3 67.9 77.1 52.7
 ASN-130   LEU-131  9.5 9.8 -30.3 1.7 165.9 166.2 -100.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-132   LYS-133  12.5 13.0 2.1 -11.2 101.6 96.9 17.6
 LYS-133   VAL-134  13.8 14.5 -16.1 10.6 27.6 33.6 24.9
 VAL-134   VAL-135  11.9 13.1 -7.0 24.1 28.9 31.5 -48.3
 VAL-135   ARG-136  12.4 12.7 3.1 -31.5 90.1 92.9 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  9.1 9.1 19.0 -51.5 156.7 144.3 97.3
 ARG-175   GLY-176  7.9 7.4 27.6 -4.5 84.2 88.6 -11.7
 GLY-176   VAL-177  4.8 4.0 3.1 2.2 111.0 110.6 -18.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees