5-Methyltetrahydropteroyltriglutamate--Homocysteine Methyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-399   SER-400  14.7 14.9 6.3 11.9 82.7 96.0 26.6
 SER-400   ILE-401  13.7 13.5 -1.2 -2.7 78.8 67.8 7.3
 ILE-401   THR-402  10.0 10.0 11.8 -21.2 153.2 173.5 149.2
 THR-402   ASN-403  10.1 11.0 6.4 -0.4 106.1 106.7 -31.9
 ASN-403   ASP-404  11.7 13.2 -46.5 35.9 128.1 128.3 -38.2
 ASP-404   PRO-405  11.7 12.6 20.9 1.7 121.3 116.9 -69.4
 PRO-405   LYS-406  15.1 16.0 -8.2 -2.0 84.3 76.8 -14.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-505   VAL-506  13.7 13.2 7.0 -1.0 82.3 83.1 5.5
 VAL-506   GLN-507  10.1 9.5 -10.4 9.5 29.2 27.6 48.3
 GLN-507   TYR-508  9.9 9.1 2.0 -5.4 138.5 128.2 -19.9
 TYR-508   PHE-509  10.7 10.4 2.7 -7.9 86.8 90.1 9.4
 PHE-509   GLY-510  8.0 8.1 -7.1 9.1 100.3 101.7 52.0
 PHE-509   GLY-510  8.0 8.1 -7.1 9.1 100.3 101.7 52.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-509   GLY-510  8.0 8.1 -7.1 9.1 100.3 101.7 52.0
 PHE-509   GLY-510  8.0 8.1 -7.1 9.1 100.3 101.7 52.0
 GLY-510   GLU-511  5.2 4.7 -9.9 9.0 170.7 166.6 6.0
 GLU-511   GLN-512  6.0 5.2 -12.1 11.5 112.8 113.9 0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-514   GLY-515  3.3 3.5 -0.8 2.0 151.8 150.7 0.3
 GLY-515   PHE-516  3.1 3.6 13.4 -12.1 79.0 75.7 6.2
 PHE-516   ALA-517  2.1 2.3 -14.2 -1.8 50.6 45.0 112.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-530   TYR-531  22.4 22.5 -12.8 20.0 84.2 89.9 8.8
 TYR-531   VAL-532  19.6 19.7 -13.6 25.4 118.0 111.3 32.0
 VAL-532   ARG-533  16.1 16.0 -2.0 -2.6 109.3 123.8 -6.3
 ARG-533   PRO-534  13.9 13.9 -4.4 -0.6 80.9 83.0 -30.9
 PRO-534   PRO-535  10.6 10.5 3.3 13.2 52.2 46.6 26.8
 PRO-535   ILE-536  7.6 7.3 -19.8 16.0 59.0 60.2 -10.6
 ILE-536   ILE-537  6.4 6.5 -0.8 3.1 102.1 97.0 51.5
 ILE-537   VAL-538  3.9 4.1 -4.5 17.6 98.7 99.5 11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-573   LEU-574  6.2 5.8 -8.4 9.6 105.2 104.9 17.3
 LEU-574   ARG-575  3.2 2.8 -0.8 1.6 111.9 113.8 -21.3
 ARG-575   TRP-576  5.8 5.5 3.5 6.4 121.3 122.2 -25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-577   PHE-578  6.6 6.5 3.3 1.2 117.3 116.6 -29.3
 PHE-578   PRO-579  7.7 7.6 6.9 -4.6 90.3 89.4 38.4
 PRO-579   ARG-580  5.5 5.5 -4.5 -4.8 106.8 106.5 1.2
 ARG-580   ASP-581  7.0 7.5 -8.1 -19.4 50.0 27.7 148.8
 ASP-581   ASP-582  10.6 10.5 46.8 -34.7 112.2 94.0 -88.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-621   LEU-622  5.5 4.8 19.1 -1.1 34.6 20.5 121.3
 LEU-622   PRO-623  4.6 4.3 -7.3 1.7 103.6 108.9 -24.6
 PRO-623   LEU-624  3.9 3.8 -5.6 9.2 139.1 139.8 -9.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-633   LEU-634  3.3 3.1 -2.6 -1.0 85.9 90.0 39.6
 LEU-634   ASN-635  6.2 5.8 5.5 4.4 63.2 70.7 38.0
 ASN-635   TRP-636  8.8 8.3 3.8 -3.2 4.8 9.1 -23.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees