Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-90   ARG-91  17.0 17.2 -6.9 3.9 27.7 28.3 22.6
 ARG-91   VAL-92  15.0 15.4 -7.9 16.3 94.3 94.5 -27.0
 VAL-92   LYS-93  11.8 12.1 5.2 -98.2 90.2 90.8 29.9
 LYS-93   ASN-94  11.6 12.1 41.1 121.0 28.9 74.7 562.4
 ASN-94   GLY-95  14.0 11.4 -100.9 -54.0 122.2 172.7 -669.8
 GLY-95   TYR-96  12.5 12.1 67.0 -9.0 83.6 70.6 119.5
 TYR-96   ALA-97  8.9 8.4 15.0 2.7 47.4 50.0 56.2
 ALA-97   GLU-98  8.7 9.2 -18.3 -8.5 156.4 146.3 -105.9
 GLU-98   LYS-99  9.9 10.2 12.8 -7.7 67.4 78.6 5.1
 LYS-99   TYR-100  7.3 7.6 -6.3 -0.8 123.9 129.3 -7.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-110   PHE-111  6.6 6.6 -2.0 4.6 12.2 15.2 -29.4
 PHE-111   THR-112  7.5 7.5 -4.0 2.3 56.2 56.7 5.9
 THR-112   ALA-113  4.0 4.0 -0.3 4.7 133.6 129.8 9.4
 ALA-113   ASN-114  0.5 0.5 -18.6 -2.2 57.1 60.4 93.1
 ASN-114   ALA-115  3.4 3.4 13.2 -21.3 87.4 85.5 -31.4
 ALA-115   TYR-116  6.1 6.4 -6.4 0.3 82.8 81.8 18.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-276   GLY-277  8.7 9.0 6.7 -16.0 77.2 77.7 -21.3
 GLY-277   ALA-278  5.2 5.4 -3.5 -3.3 52.5 61.1 60.9
 ALA-278   GLY-279  1.8 1.9 6.6 0.1 64.4 60.8 42.7
 GLY-279   ASP-280  2.1 2.1 1.9 -0.6 81.2 77.0 37.0
 ASP-280   LEU-281  4.9 4.6 4.0 -7.9 87.3 85.8 22.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-326   ALA-327  5.2 5.2 -9.6 -10.2 35.0 31.7 91.6
 ALA-327   GLY-328  2.6 2.8 -1.1 21.4 77.8 80.5 5.7
 GLY-328   GLU-329  4.9 5.2 4.8 -22.9 75.8 61.2 42.6
 GLU-329   ASP-330  7.6 7.4 22.8 6.6 108.9 119.7 -22.8
 ASP-330   SER-331  6.7 6.3 14.6 -6.0 62.6 65.6 9.9
 SER-331   PRO-332  4.6 4.5 6.3 4.3 52.3 67.4 31.1
 PRO-332   LEU-333  7.3 7.3 -14.4 6.9 153.2 152.4 -20.1
 LEU-333   ALA-334  6.1 6.3 -6.6 14.7 90.1 91.5 -21.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees