Nickel-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-239   THR-240  6.8 6.3 -2.2 -1.1 24.6 33.9 25.0
 THR-240   GLN-241  7.5 7.3 -4.4 1.6 51.1 45.8 29.5
 GLN-241   LEU-242  8.5 8.1 -6.0 -11.3 30.4 39.6 103.2
 LEU-242   SER-243  9.4 9.2 -29.4 15.3 59.4 43.0 -10.1
 SER-243   GLN-244  9.5 9.1 -6.9 -7.3 53.6 50.0 14.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-438   LEU-439  7.2 6.5 3.7 -15.9 120.2 118.4 4.6
 LEU-439   ALA-440  6.7 6.2 6.3 9.7 66.5 56.7 47.1
 ALA-440   THR-441  9.2 8.4 -45.5 12.2 103.8 96.2 47.0
 THR-441   HIS-442  11.3 10.9 -1.0 21.3 62.7 45.4 -157.0
 HIS-442   ASP-443  15.0 14.3 12.4 -14.3 86.3 93.0 62.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-446   ARG-447  14.1 13.7 12.6 -12.0 39.3 46.8 18.7
 ARG-447   GLN-448  12.5 11.8 15.6 2.0 65.8 63.2 28.5
 GLN-448   ALA-449  14.3 14.1 -6.3 6.7 56.5 56.4 34.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-469   ILE-470  12.5 12.4 -8.5 3.7 19.2 21.9 53.8
 ILE-470   SER-471  10.2 10.1 9.4 -11.5 104.1 112.3 -16.0
 SER-471   MET-472  8.4 8.2 -1.3 -13.8 68.6 63.7 28.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-482   ILE-483  10.2 9.7 -10.3 3.5 53.7 50.5 14.8
 ILE-483   PRO-484  8.0 7.2 -6.9 -9.3 25.9 19.7 100.6
 PRO-484   TYR-485  9.7 8.8 7.7 -2.5 132.0 134.9 28.7
 TYR-485   ALA-486  7.8 7.1 10.8 -8.5 129.3 132.6 -77.5
 ALA-486   PRO-487  7.9 7.7 8.2 5.5 148.9 149.1 -66.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees