Copper Amine Oxidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-87   GLN-88  9.3 9.2 0.8 -2.4 68.0 70.3 59.6
 GLN-88   VAL-89  10.4 10.4 -6.8 9.4 155.2 160.0 8.6
 VAL-89   GLU-90  12.2 12.0 -10.3 18.9 133.9 133.5 77.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-307   ILE-308  10.7 11.1 4.0 12.2 110.2 105.4 -127.3
 ILE-308   ILE-309  7.9 8.2 4.0 1.6 108.2 105.8 65.3
 ILE-309   GLU-310  5.8 6.0 0.8 -3.4 110.1 109.2 -12.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-314   ASN-315  2.9 3.0 2.3 -4.6 67.5 69.0 54.3
 ASN-315   TYR-316  2.5 2.3 7.9 -6.3 5.8 3.7 5.9
 TYR-316   THR-317  1.4 1.3 6.1 -7.1 72.9 71.3 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees