Translation Initiation Factor Eif-2b, Delta Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-110   ALA-111  2.7 2.7 -60.1 13.3 51.7 58.6 93.7
 ALA-111   LEU-112  0.9 0.5 14.2 -6.5 78.5 77.5 6.6
 LEU-112   GLU-113  3.8 3.2 -2.4 9.4 140.4 145.4 17.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-309   PHE-310  9.8 8.8 34.9 -17.5 63.6 44.3 28.7
 PHE-310   GLY-311  9.8 8.8 22.2 -119.1 44.4 43.7 -204.7
 GLY-311   TRP-312  12.6 11.9 -48.9 -11.9 163.5 117.1 -157.1
 TRP-312   ALA-313  10.4 13.7 143.8 135.9 57.8 51.5 -188.3
 ALA-313   LEU-314  11.9 11.4 175.3 1.7 19.7 7.7 580.5
 LEU-314   LYS-315  10.7 10.3 11.4 -7.3 55.5 44.3 31.3
 LYS-315   TYR-316  13.8 13.7 -2.0 -3.7 72.1 90.3 24.6
 TYR-316   THR-317  14.6 14.7 -3.3 -2.5 92.3 102.2 16.5
 THR-317   GLU-318  14.5 14.2 -3.8 15.4 24.5 28.6 -28.5
 GLU-318   PRO-319  13.5 13.7 -24.7 4.6 61.5 73.0 29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees