Poly(a) RNA Polymerase Protein Cid1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-55   LYS-56  18.3 18.4 2.7 0.0 68.6 65.5 51.0
 LYS-56   ILE-57  15.3 15.4 -4.3 7.5 150.2 152.9 71.5
 ILE-57   SER-58  14.7 14.9 -3.3 0.2 83.9 89.1 34.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-61   PHE-62  15.9 16.1 3.5 -3.1 90.8 90.3 27.7
 PHE-62   LYS-63  12.9 13.3 -5.0 -2.3 46.5 43.3 93.3
 LYS-63   GLU-64  14.4 14.7 16.6 -5.8 159.2 154.6 -125.5
 GLU-64   LYS-65  14.3 14.6 -5.6 0.8 101.9 99.3 3.7
 GLU-64   LYS-65  14.3 14.6 -5.6 0.8 101.9 99.3 3.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-64   LYS-65  14.3 14.6 -5.6 0.8 101.9 99.3 3.7
 GLU-64   LYS-65  14.3 14.6 -5.6 0.8 101.9 99.3 3.7
 LYS-65   ARG-66  10.7 11.0 -2.4 2.8 98.1 100.2 -29.4
 ARG-66   ALA-67  10.1 10.4 1.0 -1.8 24.2 17.3 2.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-86   ALA-87  3.0 3.0 5.4 -11.5 67.7 73.4 -100.5
 ALA-87   PHE-88  0.7 0.5 0.1 19.0 34.7 32.9 154.6
 PHE-88   GLY-89  1.9 2.3 6.7 -7.8 74.3 71.1 -30.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-101   MET-102  11.1 11.5 21.0 -29.0 92.9 95.1 41.7
 MET-102   ASP-103  7.5 7.9 5.0 -8.5 81.1 82.9 -28.5
 ASP-103   LEU-104  5.7 5.9 -3.1 5.3 105.2 101.3 7.2
 LEU-104   CYS-105  2.8 3.1 1.2 -0.9 71.5 76.0 36.3
 CYS-105   VAL-106  4.2 4.3 -2.8 4.5 48.9 52.0 -38.5
 CYS-105   VAL-106  4.2 4.3 -2.8 4.5 48.9 52.0 -38.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-105   VAL-106  4.2 4.3 -2.8 4.5 48.9 52.0 -38.5
 CYS-105   VAL-106  4.2 4.3 -2.8 4.5 48.9 52.0 -38.5
 VAL-106   LEU-107  5.2 5.3 4.3 26.3 79.0 77.9 1.7
 LEU-107   MET-108  8.6 8.6 -14.7 9.9 56.4 37.1 85.0
 MET-108   ASP-109  11.6 11.3 8.4 20.8 80.5 78.0 57.9
 ASP-109   SER-110  15.3 15.1 -36.7 18.1 28.1 73.8 145.5
 SER-114   ASP-115  13.1 11.9 7.6 51.5 83.8 141.1 -358.6
 ASP-115   THR-116  13.6 11.8 -31.7 24.3 64.0 56.1 -3.6
 THR-116   ILE-117  10.5 9.4 -28.1 -5.3 117.8 121.8 -263.8
 ILE-117   ALA-118  7.8 7.2 -18.7 5.2 114.2 114.7 -78.9
 ALA-118   LEU-119  7.8 6.9 6.3 -7.0 132.7 134.0 -14.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-164   ASN-165  10.4 10.4 0.3 3.0 33.1 40.1 63.7
 ASN-165   ARG-166  10.0 10.0 2.0 -4.5 41.5 37.3 -39.7
 ARG-166   LEU-167  10.4 10.4 6.3 -1.0 18.4 24.1 67.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees