Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  2.9 3.1 -49.0 47.1 115.8 109.6 -26.5
 LEU-108   GLY-109  1.0 1.0 0.4 10.5 139.9 130.0 -26.3
 GLY-109   ILE-110  4.2 4.2 27.1 -9.3 70.5 52.3 14.8
 ILE-110   SER-111  7.8 7.5 3.7 1.6 69.9 61.5 39.3
 SER-111   ILE-112  10.1 9.4 -21.7 -7.9 116.3 126.1 -42.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-212   SER-213  5.7 6.2 14.6 2.7 122.6 108.0 -24.7
 SER-213   LYS-214  2.5 2.4 -2.4 30.2 107.3 98.8 62.4
 LYS-214   GLY-215  1.5 2.2 -65.5 45.7 38.3 63.8 49.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-249   TRP-250  7.1 7.6 1.6 -3.1 90.2 87.4 6.4
 TRP-250   TRP-251  5.9 6.2 -12.0 11.5 86.9 91.2 -29.1
 TRP-251   ARG-252  2.1 2.5 -1.6 -31.7 142.9 141.2 -95.0
 ARG-252   GLY-253  2.1 1.6 21.6 2.1 51.9 38.9 75.1
 ASN-254   GLY-255  4.5 32.7 -114.5 -156.5 52.9 131.5 73.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees