Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-105   PHE-106  13.3 13.4 -4.8 5.0 58.2 57.2 64.3
 PHE-106   MET-107  10.6 10.8 -1.8 0.8 108.7 109.3 -68.3
 MET-107   SER-108  9.9 10.1 -4.7 4.1 153.7 154.3 44.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-217   LYS-218  14.3 14.4 7.3 -5.9 55.5 56.0 199.6
 LYS-218   GLY-219  15.4 15.5 -4.5 6.1 148.2 148.0 75.3
 GLY-219   TYR-220  14.5 14.6 -0.9 -3.9 145.6 144.0 -220.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-251   ASN-252  6.3 6.8 2.2 0.4 94.3 93.3 -123.4
 ASN-252   LYS-253  6.8 7.0 -0.5 -2.5 27.0 29.0 98.3
 LYS-253   TRP-254  7.3 7.7 -4.4 6.8 83.1 83.7 144.5
 TRP-254   TRP-255  10.0 10.4 -6.5 6.0 135.7 135.7 28.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees