Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.8 6.7 6.4 4.5 40.1 43.1 33.8
 THR-107   LEU-108  4.4 3.9 18.0 -15.9 117.3 116.6 2.9
 LEU-108   GLY-109  1.4 0.2 -3.4 17.0 131.0 139.7 46.1
 GLY-109   ILE-110  3.3 3.2 4.4 0.0 122.2 117.8 -21.0
 ILE-110   SER-111  6.7 6.7 -2.0 3.8 75.1 73.7 37.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  8.6 8.5 6.0 -8.1 136.4 130.2 3.3
 ASP-212   SER-213  5.3 4.9 1.2 8.2 69.9 62.1 21.5
 SER-213   LYS-214  1.9 1.8 -3.6 -5.9 80.1 80.8 27.2
 LYS-214   GLY-215  1.8 1.9 35.5 -23.1 45.8 38.7 44.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-250   TRP-251  5.8 5.9 6.7 0.1 86.2 86.0 -0.5
 TRP-251   ARG-252  3.3 2.9 -22.4 -43.0 45.5 37.9 148.7
 ARG-252   GLY-253  5.2 4.6 -176.7 12.4 40.1 22.8 -689.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees