Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  8.0 8.3 -22.2 14.6 73.4 72.7 105.2
 LEU-109   GLY-110  4.3 4.4 7.2 13.5 32.6 36.9 260.5
 GLY-110   ILE-111  1.2 1.2 13.9 -18.0 106.7 110.4 -21.6
 ILE-111   SER-112  2.6 2.6 -2.9 7.9 67.8 66.6 -6.9
 SER-112   ILE-113  4.8 4.8 1.7 3.2 108.1 108.5 -61.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-217   LYS-218  4.3 3.8 13.0 -17.8 92.5 100.9 -16.7
 LYS-218   GLY-219  6.1 6.1 4.4 16.6 45.1 37.2 257.8
 GLY-219   TYR-220  9.1 9.0 7.7 0.1 71.8 68.9 -107.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees