Kdp Operon Transcriptional Regulatory Protein Kdpe

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-117   ARG-118  3.1 3.1 -4.5 -6.0 60.1 66.3 1.4
 ARG-118   HIS-119  5.9 6.2 121.9 -50.3 162.0 146.2 -40.3
 ALA-124   PRO-125  7.4 10.6 44.5 -1.5 97.7 101.5 6.3
 PRO-125   ASP-126  10.2 11.4 9.2 12.9 54.9 75.3 5.1
 ASP-126   PRO-127  13.5 14.8 -5.8 -1.5 66.9 59.4 1.8
 PRO-127   LEU-128  16.3 17.9 1.1 -4.5 108.4 121.6 0.6
 LEU-128   VAL-129  19.1 19.8 -14.8 7.0 97.7 85.2 1.4

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees