Lipopolysaccharide Heptosyltransferase 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-181   VAL-182  9.6 9.7 3.5 1.0 111.8 110.6 -48.9
 VAL-182   PHE-183  6.5 6.4 6.8 -5.2 50.3 46.0 87.8
 PHE-183   LEU-184  4.1 4.1 2.8 -2.1 121.2 119.6 18.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-193   TRP-194  10.0 10.0 5.0 -5.7 153.0 152.0 20.1
 TRP-194   PRO-195  7.4 7.3 -4.3 3.3 80.5 81.9 -17.3
 PRO-195   GLU-196  7.0 6.8 -1.2 -2.5 105.4 106.5 47.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-214   LEU-215  5.7 5.7 1.0 -1.7 82.8 82.1 7.2
 LEU-215   PRO-216  2.1 2.1 12.1 -10.1 146.6 146.8 -52.6
 PRO-216   TRP-217  0.3 0.6 -8.0 12.8 102.0 101.0 56.7
 TRP-217   GLY-218  4.0 4.3 14.9 -27.1 151.8 154.7 426.0
 GLY-218   ALA-219  6.6 6.6 12.9 -13.2 98.5 93.8 -194.3
 ALA-219   PRO-220  9.7 10.0 -1.1 -2.9 117.6 125.4 -155.2
 PRO-220   HIS-221  11.4 11.8 3.7 0.8 1.3 7.7 191.2
 HIS-221   GLU-222  11.9 11.9 -3.7 2.3 111.7 106.9 -56.9
 GLU-222   GLU-223  8.3 8.2 -7.3 2.9 86.3 88.4 -92.4
 GLU-223   GLU-224  7.8 8.0 1.4 2.8 39.8 36.4 114.3
 GLU-224   ARG-225  10.4 10.5 -5.5 1.7 30.5 35.7 166.2
 GLU-224   ARG-225  10.4 10.5 -5.5 1.7 30.5 35.7 166.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-224   ARG-225  10.4 10.5 -5.5 1.7 30.5 35.7 166.2
 GLU-224   ARG-225  10.4 10.5 -5.5 1.7 30.5 35.7 166.2
 ARG-225   ALA-226  8.2 8.0 -0.8 3.3 91.2 95.4 68.4
 ALA-226   LYS-227  5.5 5.4 -6.4 1.4 78.1 75.4 33.2
 LYS-227   ARG-228  8.8 8.7 2.3 -2.8 172.4 172.0 39.6
 ARG-228   LEU-229  9.1 9.0 3.0 0.2 118.4 116.7 -129.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-275   ILE-276  13.7 13.6 -1.0 7.2 150.4 151.6 269.8
 ILE-276   THR-277  12.7 12.7 8.1 -7.6 97.9 97.2 -95.9
 THR-277   VAL-278  12.4 12.3 -0.4 3.2 152.5 153.8 87.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-286   ILE-287  24.7 24.6 -6.0 0.4 146.5 146.7 -214.3
 ILE-287   GLY-288  21.6 21.6 9.0 -14.7 90.4 88.7 56.6
 GLY-288   GLY-289  20.1 19.8 11.2 -6.7 32.0 32.8 161.7
 GLY-289   TYR-290  19.0 18.9 -18.9 25.0 84.7 86.7 -70.9
 GLY-289   TYR-290  19.0 18.9 -18.9 25.0 84.7 86.7 -70.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-289   TYR-290  19.0 18.9 -18.9 25.0 84.7 86.7 -70.9
 GLY-289   TYR-290  19.0 18.9 -18.9 25.0 84.7 86.7 -70.9
 TYR-290   GLY-291  21.5 21.6 -5.1 28.7 68.2 71.8 -151.6
 GLY-291   LYS-292  21.7 21.4 163.4 157.5 49.4 60.1 -1214.7
 LYS-292   ASN-293  21.9 23.0 -175.5 -166.2 124.8 119.2 831.8
 ASN-293   GLN-294  19.9 20.1 -9.8 -1.5 101.3 103.2 438.6
 GLN-294   MET-295  18.2 18.1 -11.4 17.4 166.4 166.0 277.6
 MET-295   VAL-296  17.4 17.3 12.0 -22.3 74.7 73.3 -168.1
 VAL-296   CYS-297  17.0 16.9 -12.8 15.5 149.7 154.2 69.0
 CYS-297   ARG-298  14.4 14.3 10.0 -4.0 76.4 73.7 229.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees