Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  6.5 6.6 5.0 -6.3 77.1 76.4 7.7
 GLY-110   ILE-111  6.0 6.0 -3.7 3.0 117.2 117.9 -7.0
 ILE-111   SER-112  4.9 4.9 -3.3 11.5 167.1 167.2 124.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-195   MET-196  5.0 4.7 -9.3 4.6 81.3 77.5 -19.9
 MET-196   ASN-197  4.8 4.7 -3.6 1.3 10.3 8.5 33.6
 ASN-197   GLU-198  3.9 3.8 -1.5 1.0 68.0 67.8 -2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-200   GLU-201  9.2 9.1 -3.2 0.6 156.5 157.8 -41.8
 GLU-201   GLN-202  8.9 8.7 3.0 -3.1 85.9 86.3 -12.1
 GLN-202   ARG-203  12.4 12.1 0.1 -10.6 99.3 101.5 10.5
 ARG-203   LYS-204  13.9 13.9 8.5 -3.1 35.0 41.9 62.5
 LYS-204   PRO-205  16.0 16.0 -2.2 6.5 85.7 78.4 115.8
 PRO-205   CYS-206  15.8 15.7 -17.8 11.7 115.9 119.7 -44.5
 CYS-206   ASP-207  12.7 12.6 -16.2 10.5 134.1 132.2 -56.7
 ASP-207   THR-208  10.9 11.0 5.1 -9.2 106.8 105.6 75.4
 THR-208   MET-209  7.7 7.7 2.7 -5.2 86.1 89.2 41.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-213   ASN-214  7.8 7.8 -3.4 -4.2 140.5 139.6 -96.0
 ASN-214   LEU-215  7.3 7.3 -0.9 1.9 98.4 97.9 -25.7
 LEU-215   ASP-216  9.4 9.5 -1.6 -1.9 142.6 141.5 -24.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees