Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-166   PHE-167  3.1 2.8 -4.0 10.9 100.8 104.5 32.5
 PHE-167   ARG-168  3.7 3.4 11.6 -28.8 107.2 101.8 86.3
 ARG-168   HIS-169  5.8 5.4 14.4 -32.6 123.8 104.6 12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-268   PRO-269  17.4 17.1 -9.3 11.8 49.0 52.0 -3.5
 PRO-269   ASP-270  14.3 14.1 -5.4 32.7 104.6 98.3 38.8
 ASP-270   ILE-271  10.8 10.7 13.7 -6.7 69.6 42.2 -26.7
 ILE-271   ALA-272  8.0 8.0 -28.9 11.7 64.7 60.8 47.9
 ALA-272   ILE-273  4.8 5.1 -9.8 1.6 128.5 134.4 -23.9
 ILE-273   ASN-274  1.6 2.0 0.8 -13.1 122.5 117.6 38.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees