Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-4   PRO-5  24.1 24.2 -19.6 28.3 123.0 119.8 96.8
 PRO-5   PHE-6  21.8 21.8 -15.1 4.8 83.3 76.9 114.0
 PHE-6   GLU-7  19.9 20.0 -6.6 2.4 25.0 21.8 -29.5
 GLU-7   ILE-8  19.9 20.1 -7.7 7.1 87.8 89.4 78.9
 ILE-8   ALA-9  18.6 19.0 4.3 -3.0 75.4 74.6 63.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-10   LYS-11  14.9 14.9 0.1 1.2 45.8 43.0 18.8
 LYS-11   GLN-12  14.5 14.7 4.4 -11.7 111.1 106.8 124.5
 GLN-12   LEU-13  12.7 12.8 0.5 10.8 79.8 81.3 14.6
 LEU-13   GLU-14  9.9 10.0 -7.5 8.7 162.3 164.4 58.3
 GLU-14   ARG-15  10.1 10.3 -14.0 13.8 112.9 112.2 -62.6
 ARG-15   ALA-16  9.7 10.0 -15.5 2.5 70.8 75.2 -135.0
 ARG-15   ALA-16  9.7 10.0 -15.5 2.5 70.8 75.2 -135.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-15   ALA-16  9.7 10.0 -15.5 2.5 70.8 75.2 -135.0
 ARG-15   ALA-16  9.7 10.0 -15.5 2.5 70.8 75.2 -135.0
 ALA-16   ALA-17  6.7 7.1 12.0 -14.0 57.5 68.7 -117.5
 ALA-17   GLN-18  5.2 5.2 31.0 -20.7 45.9 33.3 395.3
 GLN-18   TYR-19  5.1 5.1 -6.4 9.3 80.3 79.1 -144.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-181   GLY-182  8.2 8.3 -0.5 -11.3 57.4 56.0 213.7
 GLY-182   ILE-183  8.5 8.4 -11.4 14.9 97.9 105.3 63.8
 ILE-183   VAL-184  6.6 6.5 -12.8 18.6 86.7 86.9 -37.2
 VAL-184   ALA-185  8.4 8.7 -16.5 30.7 133.5 136.1 400.2
 VAL-184   ALA-185  8.4 8.7 -16.5 30.7 133.5 136.1 400.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-184   ALA-185  8.4 8.7 -16.5 30.7 133.5 136.1 400.2
 VAL-184   ALA-185  8.4 8.7 -16.5 30.7 133.5 136.1 400.2
 ALA-185   ARG-186  9.2 9.3 -33.0 31.6 144.5 140.8 -154.8
 ARG-186   MET-187  9.7 9.8 -10.4 10.8 99.0 98.0 -137.2
 MET-187   ASP-188  13.4 13.4 -6.3 -1.7 48.5 46.1 126.6
 MET-187   ASP-188  13.4 13.4 -6.3 -1.7 48.5 46.1 126.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-187   ASP-188  13.4 13.4 -6.3 -1.7 48.5 46.1 126.6
 MET-187   ASP-188  13.4 13.4 -6.3 -1.7 48.5 46.1 126.6
 ASP-188   ALA-189  14.3 14.3 2.1 1.9 141.3 139.1 16.0
 ALA-189   THR-190  11.2 11.3 2.0 1.1 156.2 159.4 -236.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-347   THR-348  7.3 7.2 14.5 -13.6 110.6 104.5 27.3
 THR-348   VAL-349  4.3 4.2 11.7 -8.6 170.3 170.6 -42.6
 VAL-349   SER-350  5.2 5.2 -6.4 7.3 75.0 74.3 -109.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-360   ASP-361  8.3 8.3 3.0 -6.0 70.2 68.2 -100.2
 ASP-361   TYR-362  5.8 5.9 -8.7 7.7 77.4 74.1 150.7
 TYR-362   TRP-363  2.1 2.2 16.1 -14.6 87.3 90.5 40.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-371   LEU-372  7.4 7.3 13.1 -21.3 47.2 47.0 -156.9
 LEU-372   ASP-373  7.3 7.3 18.5 -19.2 52.3 51.0 -41.0
 ASP-373   LYS-374  10.8 10.6 21.3 -14.3 45.6 43.8 241.2
 LYS-374   LYS-375  10.1 9.9 2.9 -0.7 42.4 40.9 -29.1
 LYS-375   MET-376  6.8 6.7 -5.6 11.5 131.9 126.0 206.6
 MET-376   THR-377  8.8 9.0 -1.2 -12.0 123.8 124.5 -329.1
 THR-377   LYS-378  11.6 11.6 -0.9 3.8 143.1 142.1 -25.6
 LYS-378   ALA-379  9.7 9.9 14.7 -12.3 45.1 44.7 110.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-401   ALA-402  2.3 2.6 -5.6 -0.3 59.9 62.3 270.8
 ALA-402   VAL-403  2.2 1.9 3.9 -0.7 56.8 58.9 14.9
 VAL-403   SER-404  3.6 3.5 -3.5 5.3 103.4 101.6 -53.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees