Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-33   GLN-34  7.4 7.5 10.5 -7.9 92.9 92.6 -7.6
 GLN-34   VAL-35  3.9 4.1 -0.4 -16.4 36.9 36.0 38.0
 VAL-35   SER-36  2.5 3.3 -14.2 2.0 54.6 62.5 -1.9
 SER-36   VAL-37  0.7 0.7 -8.0 18.5 96.1 88.0 -2.0
 VAL-37   SER-38  3.3 3.4 -11.3 -5.3 17.4 15.6 57.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-84   SER-85  2.3 1.9 -7.4 12.9 108.7 98.3 5.1
 SER-85   ARG-86  5.5 5.0 -10.6 2.4 84.1 87.4 20.1
 ARG-86   GLU-87  6.9 6.1 -4.0 17.3 47.0 42.6 -23.5
 GLU-87   ALA-88  9.8 8.9 -13.6 6.4 21.5 31.3 21.0
 ALA-88   ILE-89  7.8 6.8 -13.2 15.0 72.7 91.3 18.1
 ILE-89   GLU-90  6.6 5.8 1.9 -1.9 97.8 89.4 -15.7
 GLU-90   GLN-91  10.2 9.5 -7.7 -9.6 36.8 33.3 48.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees