Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-58   SER-59  2.0 2.3 21.6 -10.2 22.6 29.7 33.4
 SER-59   LYS-60  4.5 5.1 6.9 -10.2 52.4 45.2 -1.5
 LYS-60   TRP-61  5.5 4.8 -23.8 39.9 114.3 110.1 10.9
 TRP-61   GLN-62  2.6 1.3 10.3 -17.2 54.5 52.1 -20.6
 GLN-62   GLU-63  1.3 2.7 -7.0 7.5 156.4 154.2 2.5
 GLU-63   GLN-64  2.9 3.6 4.5 5.3 56.6 58.8 25.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-87   THR-88  13.7 13.1 -20.1 19.5 67.5 76.2 -7.6
 THR-88   THR-89  13.1 13.5 -28.2 -2.7 103.4 108.3 -45.4
 THR-89   GLU-90  9.8 10.6 173.6 47.9 45.3 6.3 -337.5
 GLU-90   TYR-91  10.4 10.9 -27.2 62.5 126.1 106.0 10.9
 TYR-91   TYR-92  7.0 14.5 -171.1 171.7 120.5 95.0 32.6
 TYR-92   TYR-93  5.2 14.0 93.9 -36.2 72.9 79.4 137.3
 TYR-93   PRO-94  8.0 10.8 146.0 -6.4 59.8 28.6 309.9
 PRO-94   LEU-95  10.6 12.4 19.9 16.8 9.6 39.5 101.8
 LEU-95   GLN-96  9.1 9.4 -63.5 28.9 111.8 118.1 -57.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-113   GLU-114  6.0 6.5 56.1 -27.2 26.7 53.3 66.0
 GLU-114   LYS-115  8.5 9.5 -9.9 -1.6 135.9 149.0 -25.7
 LYS-115   MET-116  6.4 7.9 -14.5 36.3 117.7 123.0 32.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees