Phosphoglycerate Kinase 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-161   ASN-162  4.4 4.3 -7.1 7.9 52.2 50.1 12.3
 ASN-162   ASP-163  1.6 1.8 2.5 -0.3 49.9 48.6 11.0
 ASP-163   ALA-164  1.8 2.0 9.3 -14.4 122.1 126.0 91.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-168   HIS-169  7.0 6.7 8.2 -7.8 42.5 49.4 -11.4
 HIS-169   ARG-170  9.5 9.5 1.4 -5.9 32.2 24.0 -10.0
 ARG-170   ALA-171  6.6 6.9 17.8 1.7 88.7 92.8 1.6
 ALA-171   HIS-172  5.5 6.0 0.0 8.4 61.7 72.7 30.4
 HIS-172   SER-173  1.8 2.2 -5.4 -2.8 68.8 65.8 -5.3
 SER-173   SER-174  3.0 3.5 3.3 -5.0 166.0 168.7 23.2
 SER-174   MET-175  2.9 2.8 1.3 7.5 131.0 126.0 -67.0
 MET-175   VAL-176  2.1 3.1 -15.4 13.7 89.8 92.4 31.1
 VAL-176   GLY-177  5.7 6.5 5.2 2.8 68.1 74.9 0.3
 GLY-177   VAL-178  6.8 7.3 -12.3 7.2 59.6 50.1 53.8
 VAL-178   ASN-179  8.2 8.3 -26.3 14.4 72.1 71.1 5.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-184   GLY-185  7.1 7.0 10.1 -0.5 92.6 102.3 -25.3
 GLY-185   GLY-186  5.1 4.9 0.4 9.5 43.9 45.0 59.1
 GLY-186   PHE-187  1.9 1.5 1.7 0.2 51.1 54.4 34.8
 PHE-187   LEU-188  2.9 3.1 8.6 -7.7 112.0 111.3 16.5
 LEU-188   MET-189  5.4 6.0 12.7 -21.1 121.7 118.8 16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-407   PRO-408  11.0 11.8 21.1 7.6 77.1 87.2 10.1
 PRO-408   GLY-409  9.1 9.7 -21.2 -3.6 52.3 44.3 97.7
 GLY-409   VAL-410  6.1 6.9 1.3 5.8 146.4 152.9 -50.6
 VAL-410   ASP-411  8.7 9.4 3.1 -10.2 74.5 83.3 -3.0
 ASP-411   ALA-412  11.2 12.1 6.1 7.7 82.9 91.2 -19.4
 ALA-412   LEU-413  9.4 10.3 -13.5 -2.3 36.2 25.3 39.2
 LEU-413   SER-414  9.2 9.7 9.0 -19.7 98.4 109.9 49.0
 SER-414   ASN-415  12.2 12.5 12.7 -10.1 125.1 128.1 -14.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees