DNA Helicase II

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-28   ALA-29  6.7 6.2 -32.7 80.3 133.8 120.7 116.5
 ALA-29   GLY-30  3.3 3.8 -21.0 -47.5 66.8 67.0 150.2
 GLY-30   ALA-31  0.5 0.5 -143.9 145.4 93.8 91.3 15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-32   SER-33  6.3 6.2 -29.5 30.0 38.8 59.3 14.0
 SER-33   GLY-34  4.3 4.3 -45.6 1.5 78.6 70.2 85.3
 GLY-34   LYS-35  7.8 8.0 21.4 -4.0 54.3 60.4 70.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-248   ASP-249  2.4 2.8 1.7 -2.6 150.4 149.9 6.4
 ASP-249   ASP-250  3.4 4.0 -3.6 -5.9 81.0 83.6 10.1
 ASP-250   GLN-251  3.1 3.8 6.2 -8.2 114.8 105.8 -5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-258   ALA-259  4.6 3.9 37.1 -19.0 163.1 151.9 -73.7
 ALA-259   GLN-260  4.8 4.0 53.7 -14.8 106.3 92.9 -45.1
 GLN-260   VAL-261  5.3 6.1 -43.9 -13.5 25.9 10.7 257.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-279   GLU-280  5.0 3.9 -62.5 31.4 91.7 83.3 28.3
 GLU-280   GLN-281  2.4 1.6 8.6 13.5 64.4 53.8 45.1
 GLN-281   ASN-282  0.8 1.2 -11.7 -2.2 59.1 59.4 27.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-303   LEU-304  10.8 10.1 38.8 -27.1 144.5 137.5 -33.2
 LEU-304   GLY-305  11.6 10.3 -9.2 -3.3 31.2 36.7 51.1
 GLY-305   LYS-306  10.3 9.4 71.6 -93.7 127.0 140.1 46.3
 LYS-306   LYS-307  6.8 7.2 27.1 -86.0 143.9 116.4 218.0
 LYS-307   LEU-308  6.1 7.1 -153.5 -144.2 93.4 68.2 -82.6
 LEU-308   TRP-309  4.1 5.1 25.8 10.3 44.7 31.0 145.5
 LEU-308   TRP-309  4.1 5.1 25.8 10.3 44.7 31.0 145.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-308   TRP-309  4.1 5.1 25.8 10.3 44.7 31.0 145.5
 LEU-308   TRP-309  4.1 5.1 25.8 10.3 44.7 31.0 145.5
 TRP-309   THR-310  5.2 5.7 -6.4 12.1 111.7 113.1 18.9
 THR-310   ASP-311  5.8 6.1 8.3 -24.4 23.5 9.7 -74.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-378   GLY-379  20.7 19.7 -111.7 34.9 110.7 101.4 -31.8
 GLY-379   MET-380  20.6 22.0 -99.2 9.2 138.5 137.2 927.1
 MET-380   ARG-381  21.9 23.0 90.7 -3.7 46.3 119.9 -242.4
 ARG-381   PHE-382  22.5 23.1 122.5 65.5 77.8 60.2 -195.4
 PHE-382   PHE-383  26.2 26.4 -23.2 10.8 147.2 140.3 -79.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-529   PRO-530  34.0 36.6 61.7 9.4 67.0 77.4 123.8
 PRO-530   LEU-531  34.4 36.1 -13.5 8.4 74.1 53.1 23.4
 LEU-531   GLN-532  32.1 34.6 -4.1 14.1 107.1 85.2 0.1
 GLN-532   ALA-533  29.0 32.1 -1.8 13.1 173.4 148.4 52.3
 ALA-533   PHE-534  30.0 31.4 -37.5 13.7 114.4 93.9 -46.8
 PHE-534   LEU-535  30.6 30.9 -11.1 15.5 97.7 53.4 -19.5
 LEU-535   SER-536  27.0 28.8 2.7 -6.1 40.9 71.2 6.3
 SER-536   HIS-537  25.8 26.6 -12.0 -11.4 151.1 141.9 -107.4
 HIS-537   ALA-538  27.9 26.4 33.1 -22.9 82.1 106.3 27.1
 ALA-538   ALA-539  26.4 25.9 15.4 -35.1 76.0 111.5 21.1
 ALA-539   LEU-540  22.8 22.6 9.5 -11.7 9.4 45.9 -13.4
 LEU-540   GLU-541  23.4 21.2 42.1 -102.2 64.5 44.5 -132.6
 GLU-541   ALA-542  25.6 21.6 138.0 -30.5 97.7 109.6 -191.1
 ALA-542   GLY-543  23.2 22.6 -10.6 117.0 138.6 129.8 491.8
 GLY-543   GLU-544  21.3 23.0 57.0 70.0 33.1 92.6 273.4
 THR-549   TRP-550  29.7 32.9 54.3 2.6 47.2 50.9 203.0
 TRP-550   GLN-551  29.6 30.7 -22.8 44.7 95.1 112.0 -46.1
 GLN-551   ASP-552  32.0 32.4 13.9 -5.7 90.6 84.2 -26.4
 ASP-552   ALA-553  30.1 30.2 8.6 5.8 141.7 138.6 -54.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees