Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  8.6 8.2 -39.2 28.7 80.2 74.7 33.0
 ILE-110   SER-111  6.2 5.9 -4.8 -9.5 24.2 28.9 120.3
 SER-111   ILE-112  5.8 5.9 8.3 -9.3 99.9 103.0 -20.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-189   GLU-190  1.6 1.4 23.8 -6.0 84.2 74.8 29.0
 GLU-190   SER-191  3.3 3.3 17.8 -9.0 17.2 12.2 65.1
 SER-191   THR-192  5.0 5.1 6.4 0.8 63.5 68.6 58.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-196   VAL-197  6.9 7.0 12.0 -14.6 115.6 116.3 24.5
 VAL-197   THR-198  5.4 5.2 -6.9 -7.9 24.8 21.4 114.8
 THR-198   GLN-199  3.1 2.9 14.8 -5.2 137.9 134.5 -77.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-206   ILE-207  3.8 4.2 12.3 1.7 81.5 79.4 66.6
 ILE-207   GLY-208  7.5 7.7 -12.1 -18.0 47.3 52.7 211.2
 GLY-208   GLY-209  10.4 10.5 19.6 -25.9 102.3 110.1 -29.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees