Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-69   PRO-70  5.3 5.5 -0.7 -0.8 144.6 145.2 64.4
 PRO-70   GLU-71  5.9 5.8 -17.6 21.4 87.2 83.3 -76.6
 GLU-71   ILE-72  9.5 9.5 1.3 -0.1 32.6 34.4 143.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-162   VAL-163  19.4 19.2 51.1 -55.7 132.1 139.6 184.2
 VAL-163   SER-164  17.9 17.8 -12.2 17.7 101.0 93.0 -221.1
 SER-164   ILE-165  15.4 15.1 -6.9 -0.3 33.0 30.8 177.8
 ILE-165   ALA-166  12.7 12.5 5.1 -23.2 101.6 98.7 174.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-167   PRO-168  7.6 7.2 -6.7 -12.0 120.8 115.7 -631.5
 PRO-168   ALA-169  4.9 4.6 -7.6 37.5 155.3 154.0 851.5
 ALA-169   LEU-170  3.1 3.2 15.7 -35.4 90.4 94.0 -408.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees