Poly(a) Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-223
TYR-224
3.2
2.8
1.3
-1.7
25.4
24.6
18.6
TYR-224
ALA-225
5.5
5.0
-7.9
6.8
113.2
112.9
-25.6
ALA-225
ASN-226
5.6
5.0
-10.5
9.1
124.9
126.3
72.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-230
PRO-231
1.1
0.8
0.4
-2.4
139.1
140.5
51.9
PRO-231
GLY-232
2.5
2.3
1.4
12.0
97.5
102.3
-71.2
GLY-232
GLY-233
5.0
4.4
-14.2
2.0
80.0
91.6
59.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
HIS-314
ASN-315
5.4
5.5
-10.2
-0.2
52.7
43.6
58.0
ASN-315
ILE-316
5.2
5.6
-8.0
10.9
19.3
24.7
-19.2
ILE-316
THR-317
5.3
5.9
0.4
-0.4
103.4
102.5
19.9
THR-317
GLU-318
8.5
9.1
0.1
1.1
39.3
42.4
8.2
THR-317
GLU-318
8.5
9.1
0.1
1.1
39.3
42.4
8.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-317
GLU-318
8.5
9.1
0.1
1.1
39.3
42.4
8.2
THR-317
GLU-318
8.5
9.1
0.1
1.1
39.3
42.4
8.2
GLU-318
SER-319
10.5
11.1
-6.6
6.5
142.1
137.2
-19.3
SER-319
THR-320
8.6
9.1
5.7
-3.5
96.7
95.7
43.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-353
PHE-354
6.5
6.0
8.8
-6.9
73.4
74.3
34.2
PHE-354
PHE-355
6.8
6.5
5.2
-6.7
120.2
118.7
54.5
PHE-355
PHE-356
10.1
9.7
12.0
-7.6
167.8
168.1
-30.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-384
LYS-385
12.7
12.2
11.7
-6.6
79.0
81.8
98.1
LYS-385
VAL-386
14.3
14.0
5.1
-1.5
21.9
20.4
-0.1
VAL-386
ARG-387
13.3
13.0
1.3
1.2
82.1
82.8
12.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-388
LEU-389
13.6
14.0
2.3
-4.1
144.5
143.0
28.5
LEU-389
VAL-390
15.5
15.8
4.8
-1.2
131.9
134.4
-17.6
VAL-390
MET-391
12.7
13.0
-5.5
3.8
101.0
102.1
4.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-519
GLU-520
20.0
20.2
-32.0
12.6
38.3
41.9
56.3
GLU-520
VAL-521
19.9
20.0
1.7
1.5
93.6
96.1
6.6
VAL-521
PHE-522
16.2
16.3
-3.8
15.2
129.1
122.6
125.6
PHE-522
ASP-523
15.9
15.9
17.6
6.5
80.9
77.0
-53.7
PHE-522
ASP-523
15.9
15.9
17.6
6.5
80.9
77.0
-53.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-522
ASP-523
15.9
15.9
17.6
6.5
80.9
77.0
-53.7
PHE-522
ASP-523
15.9
15.9
17.6
6.5
80.9
77.0
-53.7
ASP-523
GLU-524
17.6
16.9
20.8
-15.1
155.6
133.7
-54.9
GLU-524
ASN-525
20.1
19.9
-40.4
46.6
66.8
45.0
89.6
ASN-525
GLU-526
17.5
17.2
-1.4
0.0
63.0
51.5
200.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees