Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-16   VAL-17  5.6 5.6 0.0 -3.1 106.2 109.7 -64.6
 VAL-17   MET-18  9.2 9.1 5.6 5.7 39.8 40.2 100.4
 MET-18   TYR-19  10.2 10.2 1.6 1.7 57.1 60.7 -66.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-32   GLU-33  13.7 13.6 -6.5 4.7 84.1 83.6 79.3
 GLU-33   GLY-34  10.3 10.3 4.6 1.9 58.7 57.3 53.4
 GLY-34   TYR-35  7.1 7.0 0.2 -6.9 45.2 44.9 -117.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  3.5 3.6 -9.8 0.9 122.8 119.3 -162.4
 LEU-108   GLY-109  5.4 5.5 6.7 -7.1 134.2 131.4 -11.3
 GLY-109   ILE-110  8.6 8.5 5.3 9.7 61.9 59.6 192.0
 ILE-110   SER-111  11.3 11.4 -1.5 1.7 110.3 111.7 -94.1
 SER-111   ILE-112  14.0 13.9 -2.9 5.5 125.0 125.7 27.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  13.5 13.2 2.1 -11.0 26.7 31.1 -144.3
 ILE-211   ASP-212  14.1 14.2 1.4 4.1 43.4 40.6 125.1
 ASP-212   SER-213  10.7 10.8 6.3 1.7 115.0 112.4 -97.1
 SER-213   LYS-214  7.7 7.4 12.8 2.8 72.4 78.3 220.9
 LYS-214   GLY-215  4.1 4.0 -23.1 29.9 43.4 49.5 -137.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-247   GLU-248  5.1 5.0 3.9 -0.4 30.7 30.5 26.5
 GLU-248   LYS-249  6.9 6.9 -7.5 9.8 142.4 140.8 54.5
 LYS-249   TRP-250  5.8 5.7 -6.1 -1.0 98.5 97.0 -94.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees