Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-56   GLU-57  2.3 2.7 2.9 -1.9 48.0 48.9 -3.0
 GLU-57   LEU-58  4.9 5.5 0.7 0.8 29.9 27.2 11.2
 LEU-58   LEU-59  2.9 3.5 1.0 2.6 92.6 89.9 -25.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-88   ALA-89  14.0 14.6 39.9 -11.1 105.8 97.1 -30.3
 ALA-89   GLU-90  16.7 17.3 9.3 54.0 132.3 103.6 -114.5
 GLU-90   ASN-91  14.8 15.1 143.4 67.6 107.8 31.3 -317.4
 ASN-91   VAL-92  11.0 14.6 93.5 95.4 40.1 85.5 774.5
 VAL-92   SER-93  9.7 11.2 31.2 43.9 67.1 95.4 201.8
 SER-93   ARG-94  10.8 10.5 -60.1 6.4 144.7 156.1 -379.8
 ARG-94   PRO-95  10.8 11.1 0.1 -11.6 74.5 78.3 -41.3
 PRO-95   GLU-96  7.4 8.1 9.1 -7.4 63.3 77.0 -23.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-103   PRO-104  0.8 1.3 -5.2 -4.7 147.0 146.3 -3.3
 PRO-104   SER-105  2.0 2.7 13.6 -6.5 68.9 61.9 19.8
 SER-105   HIS-106  3.0 2.9 -8.4 4.7 81.2 86.6 13.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-111   ALA-112  9.1 9.8 -0.4 10.2 165.1 165.7 83.7
 ALA-112   TRP-113  7.2 7.9 -21.4 20.5 102.3 107.0 -20.6
 TRP-113   ARG-114  7.2 7.5 -42.9 -6.0 78.0 81.9 24.3
 ARG-114   THR-115  10.9 11.0 27.0 -8.6 42.0 39.1 144.1
 THR-115   VAL-116  12.2 12.4 20.4 -24.8 90.2 51.7 -34.3
 VAL-116   ASN-117  11.0 11.6 10.5 2.9 151.6 119.2 -18.2
 ASN-117   HIS-118  11.2 12.5 -16.7 87.3 71.3 82.3 -38.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees