Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-284   LEU-285  21.4 21.5 16.4 4.3 137.5 127.0 -546.3
 LEU-285   ASN-286  19.3 19.1 -17.0 17.9 21.9 20.8 -39.1
 ASN-286   GLN-287  19.9 20.0 1.2 0.0 123.3 125.7 -163.6
 GLN-287   ARG-288  17.6 18.0 -3.4 -2.0 102.2 102.6 53.9
 ARG-288   LYS-289  17.2 17.3 4.6 -3.5 35.1 38.7 31.6
 LYS-289   LEU-290  16.0 15.9 3.3 -3.6 100.8 102.7 62.2
 LEU-290   VAL-291  13.7 13.8 -1.9 1.1 66.4 65.8 -21.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-416   THR-417  13.4 13.3 15.6 -18.6 95.7 96.0 18.9
 THR-417   LEU-418  14.6 14.4 1.7 1.0 153.9 154.0 -169.4
 LEU-418   THR-419  13.2 13.2 -10.1 1.2 39.9 42.7 337.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-430   LYS-431  18.7 18.6 6.5 -5.1 11.4 14.8 191.2
 LYS-431   LEU-432  19.0 19.3 -13.8 2.7 115.7 120.3 41.0
 LEU-432   ASN-433  18.7 18.8 3.0 -11.6 53.9 51.8 -311.0
 ASN-433   ILE-434  22.0 21.9 2.0 -0.9 50.3 54.0 135.8
 ILE-434   VAL-435  22.0 21.9 -5.3 12.9 105.1 106.4 228.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-444   ARG-445  10.1 9.9 -2.5 4.9 114.5 117.5 104.5
 ARG-445   GLU-446  7.4 7.3 2.9 -8.9 92.9 92.3 29.0
 GLU-446   LEU-447  8.8 8.8 -2.2 -6.2 73.1 73.2 -83.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-466   ILE-467  5.7 5.7 3.3 -1.5 56.9 58.6 54.7
 ILE-467   THR-468  7.5 7.5 1.2 -1.3 108.1 108.5 37.5
 THR-468   GLU-469  10.6 10.6 -7.4 11.0 133.5 132.8 24.6
 GLU-469   ARG-470  13.2 13.2 -3.6 0.5 81.8 82.2 33.8
 ARG-470   ALA-471  13.0 12.9 -2.4 8.1 77.7 75.8 -140.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-478   GLY-479  5.9 6.0 -6.8 10.7 95.2 93.7 2.7
 GLY-479   LEU-480  2.4 2.5 0.3 1.6 23.2 23.3 109.5
 LEU-480   HIS-481  0.5 0.5 -1.0 -1.6 104.3 102.5 -30.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-485   ALA-486  11.1 11.3 4.2 -9.6 139.6 143.0 64.3
 ALA-486   PRO-487  13.4 13.4 -1.4 -3.2 87.8 89.0 -229.2
 PRO-487   GLY-488  16.5 16.6 0.5 3.9 68.5 71.2 131.6
 GLY-488   VAL-489  19.6 19.6 1.5 -3.6 17.9 18.7 16.3
 VAL-489   ASP-490  17.9 17.9 -5.9 3.3 127.1 125.0 -77.0
 ASP-490   LEU-491  18.4 18.4 -3.4 7.5 123.1 123.1 40.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-502   PRO-503  6.6 6.5 -8.2 1.5 49.9 47.5 165.2
 PRO-503   VAL-504  5.1 5.1 2.0 -7.3 95.8 94.6 18.7
 VAL-504   ILE-505  6.4 6.5 1.8 -4.1 144.6 146.9 144.6
 ILE-505   SER-506  9.0 9.0 5.7 -9.2 55.6 57.6 218.8
 ILE-505   SER-506  9.0 9.0 5.7 -9.2 55.6 57.6 218.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-505   SER-506  9.0 9.0 5.7 -9.2 55.6 57.6 218.8
 ILE-505   SER-506  9.0 9.0 5.7 -9.2 55.6 57.6 218.8
 SER-506   PRO-507  9.1 9.2 -1.9 6.1 103.0 106.3 4.1
 PRO-507   GLU-508  12.8 12.8 -8.1 6.4 167.9 168.2 -90.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-509   LYS-510  10.5 10.6 2.4 0.2 142.9 142.0 8.5
 LYS-510   LEU-511  11.3 11.4 10.2 -14.5 97.5 94.5 93.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-516   PHE-517  11.8 11.8 7.2 2.4 97.8 98.5 -71.4
 PHE-517   ILE-518  15.5 15.5 -12.6 13.6 139.8 142.2 36.8
 ILE-518   ASP-519  16.7 16.6 4.5 -1.7 61.7 64.7 26.1
 ASP-519   ALA-520  18.4 18.2 -5.6 0.3 169.1 165.8 -180.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees