Nad-Dependent Malic Enzyme, Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-286   ALA-287  1.5 1.6 -14.6 3.6 112.4 108.5 17.3
 ALA-287   LEU-288  4.1 4.1 23.0 -14.5 87.1 84.1 62.7
 LEU-288   ALA-289  4.3 4.3 7.8 -6.6 151.0 150.8 -36.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-462   GLY-463  13.4 13.3 -5.4 5.3 98.4 98.1 -15.0
 GLY-463   GLN-464  9.7 9.7 14.8 -5.0 134.3 127.5 -36.8
 GLN-464   GLY-465  8.9 8.8 -26.6 9.7 60.9 47.3 123.8
 GLY-465   ASN-466  6.6 7.0 12.3 -35.7 94.6 105.2 5.5
 ASN-466   ASN-467  6.9 7.3 4.0 -7.0 103.8 93.8 -47.9
 ASN-467   VAL-468  6.2 6.3 35.0 -18.0 40.7 35.7 113.4
 VAL-468   TYR-469  7.1 7.6 -16.4 2.5 108.4 115.1 -81.9
 TYR-469   ILE-470  3.5 4.0 29.4 -29.2 115.6 117.7 8.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-491   LEU-492  7.0 6.8 4.1 -5.9 95.7 93.6 0.7
 LEU-492   GLU-493  7.3 6.9 -5.5 7.8 27.6 29.6 -34.0
 GLU-493   ALA-494  9.6 9.4 -18.8 18.4 38.2 38.0 45.3
 ALA-494   ALA-495  6.9 7.0 -12.6 6.7 98.2 99.6 -22.2
 ALA-494   ALA-495  6.9 7.0 -12.6 6.7 98.2 99.6 -22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-494   ALA-495  6.9 7.0 -12.6 6.7 98.2 99.6 -22.2
 ALA-494   ALA-495  6.9 7.0 -12.6 6.7 98.2 99.6 -22.2
 ALA-495   LYS-496  4.8 4.4 4.3 7.4 59.5 61.6 58.0
 LYS-496   ALA-497  8.4 7.8 -11.9 9.2 161.5 168.3 -36.2
 ALA-497   LEU-498  8.3 7.8 7.2 -6.3 125.4 126.1 16.7
 ALA-497   LEU-498  8.3 7.8 7.2 -6.3 125.4 126.1 16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-497   LEU-498  8.3 7.8 7.2 -6.3 125.4 126.1 16.7
 ALA-497   LEU-498  8.3 7.8 7.2 -6.3 125.4 126.1 16.7
 LEU-498   THR-499  4.8 4.3 -3.4 -6.1 79.1 78.7 3.6
 THR-499   SER-500  6.8 6.3 -5.0 13.2 47.8 54.1 -96.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-514   PRO-515  19.0 18.7 -16.9 22.6 133.3 131.3 35.2
 PRO-515   LEU-516  17.9 17.4 6.5 1.6 49.1 49.8 70.8
 PRO-514   PRO-515  4.3 4.2 -16.9 22.6 111.4 115.1 48.3
 PRO-514   PRO-515  19.0 18.7 -16.9 22.6 133.3 131.3 35.2
 PRO-515   LEU-516  17.9 17.4 6.5 1.6 49.1 49.8 70.8
 LEU-512   TYR-513  9.3 9.0 5.6 0.6 84.9 81.9 13.8
 TYR-513   PRO-514  5.8 5.6 -12.0 6.1 173.9 173.6 -51.0
 PRO-514   PRO-515  4.3 4.2 -16.9 22.6 111.4 115.1 48.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees