Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-137   ALA-138  7.6 7.5 8.5 0.4 26.4 24.4 50.2
 ALA-138   THR-139  7.4 7.4 3.4 4.8 72.8 76.4 15.1
 THR-139   ASN-140  8.2 7.9 -9.6 5.0 139.6 144.4 -35.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-163   GLN-164  3.5 2.9 -23.6 5.6 120.1 120.0 -46.9
 GLN-164   ASP-165  5.6 5.0 8.6 -8.7 126.2 122.6 -31.5
 ASP-165   LEU-166  7.2 6.4 30.0 -30.0 127.6 133.2 18.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees