3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-196   ALA-197  8.7 8.0 17.5 -30.5 74.0 96.0 -7.8
 ALA-197   LEU-198  8.7 8.0 -2.2 25.5 168.4 143.7 72.0
 LEU-198   GLU-199  7.7 7.8 -5.6 35.0 125.8 129.0 56.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-212   LYS-213  23.2 21.9 -77.3 157.2 14.1 36.7 -276.9
 LYS-213   VAL-214  22.9 20.9 -106.1 33.6 62.3 49.1 125.2
 VAL-214   ALA-215  21.7 21.9 -25.6 4.6 39.6 14.4 47.9
 ALA-215   ASP-216  21.3 21.9 -2.3 -6.6 96.5 76.5 4.2
 ASP-216   LYS-217  18.4 18.3 -30.3 51.3 90.7 106.6 6.0
 LYS-217   ILE-218  16.5 17.0 -51.3 -3.7 40.4 59.7 122.9
 ILE-218   GLN-219  17.3 19.0 13.7 -5.7 110.3 145.8 -15.3
 GLN-219   LEU-220  13.6 16.8 15.7 -18.6 49.5 80.7 -11.0
 LEU-220   ILE-221  12.7 13.7 26.8 0.7 87.0 96.0 7.5
 LEU-220   ILE-221  12.7 13.7 26.8 0.7 87.0 96.0 7.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-220   ILE-221  12.7 13.7 26.8 0.7 87.0 96.0 7.5
 LEU-220   ILE-221  12.7 13.7 26.8 0.7 87.0 96.0 7.5
 ILE-221   ASP-222  15.5 15.8 9.6 -6.9 36.0 38.0 11.3
 ASP-222   ASN-223  14.8 15.8 6.5 -12.6 93.4 86.7 -11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-389   SER-390  4.6 5.2 -1.8 -11.4 53.6 56.3 21.5
 SER-390   THR-391  4.6 5.3 -5.0 37.5 99.3 92.4 19.4
 THR-391   GLY-392  7.2 8.1 -11.1 -35.8 25.4 28.8 164.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees