Atp Synthase Alpha Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-455   ASP-456  16.7 17.1 31.8 -16.7 158.4 159.6 -217.2
 ASP-456   GLY-457  18.4 18.5 8.0 4.3 119.7 129.9 -106.6
 GLY-457   ILE-458  20.7 20.5 -46.8 56.6 99.2 89.1 36.2
 ILE-458   GLU-459  18.5 18.3 4.9 -5.6 140.7 142.8 9.1
 GLU-459   LEU-460  17.3 16.7 -9.2 8.5 100.6 105.3 2.9
 LEU-460   SER-461  13.5 12.9 -4.0 4.8 103.9 98.7 40.9
 SER-461   ARG-462  13.6 12.5 2.4 -0.1 21.1 32.4 -65.4
 ARG-462   ILE-463  15.2 14.5 -0.5 4.3 138.1 140.6 3.7
 ILE-463   GLY-464  12.4 12.0 -17.7 4.2 125.7 126.8 -166.9
 LEU-455   ASP-456  5.1 6.0 31.8 -16.7 35.9 44.9 103.4
 ASP-456   GLY-457  8.3 9.3 8.0 4.3 38.2 28.7 96.9
 GLY-457   ILE-458  7.7 8.8 -46.8 56.6 104.2 113.1 7.9
 ILE-458   GLU-459  4.0 5.0 4.9 -5.6 45.9 46.3 -21.0
 GLU-459   LEU-460  2.7 4.2 -9.2 8.5 72.7 68.9 -3.9
 LEU-460   SER-461  4.6 5.9 -4.0 4.8 93.6 99.4 -35.5
 SER-461   ARG-462  4.3 5.0 2.4 -0.1 131.7 120.7 76.3
 ARG-462   ILE-463  2.9 2.6 -0.5 4.3 18.0 17.1 -36.5
 ILE-463   GLY-464  3.9 4.0 -17.7 4.2 66.7 67.1 78.1
 GLY-464   GLU-465  7.1 6.9 12.9 -1.7 111.3 96.9 -25.4
 LEU-455   ASP-456  16.7 17.1 31.8 -16.7 158.4 159.6 -217.2
 ASP-456   GLY-457  18.4 18.5 8.0 4.3 119.7 129.9 -106.6
 GLY-457   ILE-458  20.7 20.5 -46.8 56.6 99.2 89.1 36.2
 ILE-458   GLU-459  18.5 18.3 4.9 -5.6 140.7 142.8 9.1
 GLU-459   LEU-460  17.3 16.7 -9.2 8.5 100.6 105.3 2.9
 LEU-460   SER-461  13.5 12.9 -4.0 4.8 103.9 98.7 40.9
 SER-461   ARG-462  13.6 12.5 2.4 -0.1 21.1 32.4 -65.4
 ARG-462   ILE-463  15.2 14.5 -0.5 4.3 138.1 140.6 3.7
 ILE-463   GLY-464  12.4 12.0 -17.7 4.2 125.7 126.8 -166.9
 LEU-455   ASP-456  5.1 6.0 31.8 -16.7 35.9 44.9 103.4
 ASP-456   GLY-457  8.3 9.3 8.0 4.3 38.2 28.7 96.9
 GLY-457   ILE-458  7.7 8.8 -46.8 56.6 104.2 113.1 7.9
 ILE-458   GLU-459  4.0 5.0 4.9 -5.6 45.9 46.3 -21.0
 GLU-459   LEU-460  2.7 4.2 -9.2 8.5 72.7 68.9 -3.9
 LEU-460   SER-461  4.6 5.9 -4.0 4.8 93.6 99.4 -35.5
 SER-461   ARG-462  4.3 5.0 2.4 -0.1 131.7 120.7 76.3
 ARG-462   ILE-463  2.9 2.6 -0.5 4.3 18.0 17.1 -36.5
 ILE-463   GLY-464  3.9 4.0 -17.7 4.2 66.7 67.1 78.1
 GLY-464   GLU-465  7.1 6.9 12.9 -1.7 111.3 96.9 -25.4
 GLU-465   PHE-466  6.9 6.3 -15.0 11.1 40.7 44.6 15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-484   ILE-485  4.0 3.6 -3.7 3.4 72.8 74.0 40.7
 ILE-485   ARG-486  4.7 4.0 2.1 6.0 74.5 72.6 44.5
 ARG-486   GLU-487  8.3 7.5 -11.3 14.6 165.9 170.1 1.4
 GLU-487   LYS-488  8.1 7.0 -6.2 13.4 117.7 111.6 65.9
 LYS-488   GLY-489  6.1 5.0 19.5 -8.8 118.3 111.7 -94.2
 GLY-489   GLU-490  8.1 8.0 -4.0 -0.5 83.9 66.3 32.7
 GLU-490   LEU-491  6.9 6.7 5.6 20.9 109.0 119.6 -62.0
 LEU-491   SER-492  5.3 4.9 -5.8 0.6 120.6 124.5 73.6
 SER-492   LYS-493  6.1 5.1 4.5 2.4 129.2 124.5 -61.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-500   SER-501  7.1 6.9 -1.7 2.9 63.0 63.0 -10.4
 SER-501   ALA-502  8.9 8.9 -3.8 11.2 65.3 63.2 -6.7
 ALA-502   THR-503  6.6 6.5 -15.1 7.4 22.6 26.2 32.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees