Aspartyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1298   LEU-1299  7.0 6.4 5.8 1.3 81.7 83.3 79.6
 LEU-1299   LYS-1300  6.5 6.6 24.3 -22.6 12.6 13.6 17.2
 LYS-1300   GLU-1301  8.3 8.4 -1.2 -1.6 95.8 95.8 -18.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-1401   ALA-1402  4.3 4.5 8.2 4.1 16.6 18.0 110.7
 ALA-1402   VAL-1403  4.3 4.4 -13.2 13.3 108.4 102.9 -60.6
 VAL-1403   ARG-1404  7.5 7.2 -12.8 5.9 75.3 73.1 12.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-1406   ALA-1407  6.6 6.3 -8.4 13.4 99.4 105.2 41.1
 ALA-1407   ALA-1408  9.9 9.4 5.3 -1.5 89.6 85.6 14.3
 ALA-1408   ASP-1409  10.0 9.2 -3.2 -0.6 21.5 24.3 53.9
 ASP-1409   LEU-1410  9.7 9.5 -15.9 24.9 69.7 85.8 -49.2
 LEU-1410   LEU-1411  12.1 12.0 -7.6 17.3 116.3 119.3 95.5
 LEU-1411   GLY-1412  14.5 14.0 -27.2 58.7 81.3 71.9 -42.5
 GLY-1412   LEU-1413  14.0 14.5 -58.4 32.2 148.4 122.2 -157.0
 LEU-1413   LYS-1414  14.0 13.4 -28.2 -19.1 86.8 61.2 1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees