Protein (Actin)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-106   GLU-107  15.6 15.9 -8.5 5.5 146.7 146.2 -23.1
 GLU-107   ALA-108  17.2 17.7 -8.7 8.8 135.7 138.1 77.5
 ALA-108   PRO-109  16.5 16.7 5.5 0.4 79.5 76.6 -14.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-113   SER-114  27.9 28.1 -14.1 2.7 104.9 107.4 -55.9
 SER-114   ASN-115  28.9 29.4 10.5 -7.2 63.4 74.5 2.3
 ASN-115   ARG-116  25.5 25.9 -0.7 -0.7 159.3 159.6 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-142   TYR-143  15.7 15.5 7.9 -1.7 163.8 165.1 -77.2
 TYR-143   SER-144  16.0 15.6 -4.4 -7.6 72.0 69.3 29.5
 SER-144   SER-145  12.6 12.3 -4.2 29.4 99.7 101.2 79.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-329   ILE-330  17.6 18.6 0.4 2.4 29.9 27.5 -4.8
 ILE-330   ALA-331  15.7 16.9 7.3 3.6 96.1 96.4 -150.6
 ALA-331   PRO-332  12.3 13.3 36.8 -11.3 33.7 22.8 199.3
 PRO-332   PRO-333  10.9 11.6 2.4 5.8 98.7 94.5 77.7
 PRO-333   GLU-334  9.1 9.9 -37.5 -11.4 104.5 80.7 -27.3
 GLU-334   ARG-335  6.1 6.2 61.6 -12.8 120.5 102.9 -248.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees