Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-115   ILE-116  3.3 3.5 -7.4 -11.2 51.9 55.2 46.4
 ILE-116   VAL-117  2.1 1.8 7.1 -0.2 104.2 109.2 15.5
 VAL-117   ASP-118  1.7 2.8 -2.5 13.5 130.8 134.0 13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-159   GLN-160  7.5 7.0 -64.5 75.8 83.0 89.8 20.6
 GLN-160   GLU-161  6.9 7.7 -17.1 -3.7 90.5 83.4 15.0
 GLU-161   GLU-162  5.3 6.8 25.7 -19.5 32.0 35.1 1.7
 GLU-162   THR-163  5.3 7.3 0.0 4.6 68.3 66.6 0.7
 THR-163   VAL-164  3.1 4.3 -9.9 4.2 53.3 55.3 5.8
 VAL-164   ARG-165  1.0 2.2 -9.9 -2.4 101.2 93.9 -8.6
 ARG-165   LYS-166  2.9 4.7 25.2 -16.6 36.6 29.8 14.1
 LYS-166   ARG-167  2.2 4.2 -5.0 8.0 76.8 89.6 12.7
 ARG-167   LEU-168  3.2 2.5 -3.5 2.0 62.6 61.9 7.2
 LEU-168   VAL-169  5.2 5.2 -8.8 1.5 126.1 120.2 -20.6
 VAL-169   GLU-170  7.2 7.9 7.6 -4.1 61.2 47.3 3.0
 GLU-170   TYR-171  7.6 7.2 -9.5 -0.3 49.6 65.7 8.4
 TYR-171   HIS-172  9.2 8.4 4.0 -2.8 90.6 105.4 -8.5
 HIS-172   GLN-173  11.3 11.0 -2.6 8.0 146.0 135.4 5.1
 GLN-173   MET-174  12.2 12.6 28.7 10.9 78.2 65.0 22.7
 MET-174   THR-175  13.0 12.7 8.5 -10.8 135.2 127.8 2.0
 THR-175   ALA-176  13.8 14.4 28.8 -15.1 128.0 113.3 -20.9
 ALA-176   PRO-177  14.9 16.5 -5.9 -16.4 102.0 107.7 -12.9
 PRO-177   LEU-178  18.2 19.5 -9.5 4.1 71.9 76.5 8.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees