Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-104   PHE-105  11.5 11.5 8.1 -8.4 147.2 150.1 1.7
 PHE-105   MET-106  12.5 12.1 9.0 -23.6 118.7 120.7 13.9
 MET-106   THR-107  9.1 8.7 5.8 9.4 38.6 45.0 31.4
 THR-107   LEU-108  7.6 6.3 25.7 -14.8 110.1 115.6 -23.2
 LEU-108   GLY-109  4.5 2.8 -21.4 25.9 138.3 139.9 5.1
 GLY-109   ILE-110  2.8 2.2 -56.3 31.7 62.3 67.2 35.0
 ILE-110   SER-111  4.7 4.4 -3.2 -4.1 60.8 68.9 28.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-209   LEU-210  11.6 10.7 3.4 9.6 103.4 113.4 -13.6
 LEU-210   ILE-211  8.1 7.4 2.9 8.5 157.2 161.9 -6.2
 ILE-211   ASP-212  7.3 7.4 -167.8 142.3 71.0 47.2 -18.5
 ASP-212   SER-213  4.3 4.4 129.9 -104.2 70.8 55.6 47.3
 SER-213   LYS-214  4.9 3.8 -4.7 2.5 79.6 68.4 21.4
 LYS-214   GLY-215  4.1 3.8 21.7 -1.1 38.7 38.9 40.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-250   TRP-251  7.5 7.8 0.5 -10.0 81.2 86.1 -5.7
 TRP-251   ARG-252  4.4 4.7 0.6 -0.8 144.9 143.1 0.0
 ARG-252   GLY-253  5.0 5.8 15.8 -5.6 126.0 133.9 212.0
 GLY-253   ASN-254  2.2 5.4 22.2 -151.3 155.6 43.9 91.3
 ASN-254   GLY-255  2.9 6.3 19.0 118.1 106.5 126.6 -246.2
 GLY-255   CYS-256  6.1 5.2 -175.9 9.1 110.5 87.7 -57.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees