Phytochrome-Like Protein Cph1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-314   ASN-315  3.7 3.5 -0.2 3.3 89.0 83.6 -15.0
 ASN-315   ILE-316  1.7 2.1 -2.4 3.2 147.9 142.6 -3.4
 ILE-316   SER-317  0.6 1.1 6.8 -1.8 96.0 96.9 38.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-447   VAL-448  7.2 6.8 1.0 7.6 55.3 61.3 32.1
 VAL-448   ASN-449  3.8 3.4 -19.2 11.7 62.9 58.1 34.3
 ASN-449   TRP-450  1.9 2.2 -5.9 6.8 99.3 93.6 -8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-472   GLN-473  14.3 14.4 -10.7 -0.3 86.2 113.2 3.7
 GLN-473   SER-474  14.9 15.2 17.8 15.5 102.7 74.2 9.0
 SER-474   PHE-475  11.7 11.8 -8.0 37.3 34.6 34.7 -132.4
 PHE-475   ASP-476  9.9 11.4 -12.6 4.8 90.5 95.3 12.3
 ASP-476   LEU-477  8.7 7.9 3.5 -59.8 94.4 141.4 141.4
 LEU-477   TRP-478  5.8 5.4 24.5 5.0 39.0 65.9 92.3
 TRP-478   LYS-479  2.5 1.6 33.6 -33.9 110.0 132.6 -58.9
 LYS-479   GLU-480  2.6 2.7 -1.9 9.3 111.1 105.5 -8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees