Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.2 4.3 -8.3 4.9 12.9 15.5 -14.4
 LEU-109   GLY-110  5.5 5.6 1.7 13.9 94.5 97.6 36.6
 GLY-110   ILE-111  8.4 8.6 5.6 -13.5 166.4 171.4 102.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-196   ASN-197  4.6 4.9 3.2 3.4 54.4 50.9 49.6
 ASN-197   GLU-198  2.3 2.7 4.9 -9.0 95.9 92.6 0.7
 GLU-198   TYR-199  1.2 0.8 7.2 -4.9 73.6 75.2 -6.7
 TYR-199   ILE-200  3.8 3.9 3.3 -3.7 9.7 7.5 2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-204   PRO-205  7.7 7.5 -0.9 -25.6 61.7 57.8 74.7
 PRO-205   CYS-206  6.2 6.5 33.3 -9.0 58.1 63.3 88.6
 CYS-206   ASP-207  6.1 5.9 2.1 3.0 111.6 113.2 -34.2
 ASP-207   THR-208  4.7 4.3 -7.8 6.3 121.7 123.4 11.1
 THR-208   MET-209  3.6 3.1 -1.9 -3.0 36.8 35.7 -18.9
 THR-208   MET-209  3.6 3.1 -1.9 -3.0 36.8 35.7 -18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-208   MET-209  3.6 3.1 -1.9 -3.0 36.8 35.7 -18.9
 THR-208   MET-209  3.6 3.1 -1.9 -3.0 36.8 35.7 -18.9
 MET-209   LYS-210  5.9 5.4 -2.2 4.0 51.4 50.6 68.6
 LYS-210   VAL-211  6.0 5.7 0.6 0.7 104.6 100.5 -45.9
 VAL-211   GLY-212  9.7 9.5 5.0 -7.9 48.3 48.3 -41.1
 VAL-211   GLY-212  9.7 9.5 5.0 -7.9 48.3 48.3 -41.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-211   GLY-212  9.7 9.5 5.0 -7.9 48.3 48.3 -41.1
 VAL-211   GLY-212  9.7 9.5 5.0 -7.9 48.3 48.3 -41.1
 GLY-212   GLY-213  11.8 11.9 1.3 6.0 33.8 32.0 30.2
 GLY-213   ASN-214  11.1 11.4 -1.3 -4.3 84.9 83.1 16.7
 ASN-214   LEU-215  9.9 10.3 3.5 2.9 79.5 81.0 -13.8
 LEU-215   ASP-216  13.1 13.5 -8.5 10.3 143.3 148.3 -1.7
 ASP-216   SER-217  12.6 13.0 -2.9 6.3 116.5 117.3 5.6
 SER-217   LYS-218  10.1 10.6 -3.7 5.1 100.6 106.7 -30.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees