Vascular Apoptosis-Inducing Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-484   PHE-485  7.1 7.2 -7.9 7.3 42.6 40.6 4.1
 PHE-485   GLN-486  4.2 4.4 -2.3 -6.3 110.2 108.8 7.0
 GLN-486   ARG-487  0.9 1.1 -12.4 11.6 106.1 102.0 54.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-490   PRO-491  5.5 5.2 0.0 -2.4 172.4 171.7 -17.7
 PRO-491   CYS-492  7.0 6.8 -0.7 -3.7 116.6 117.2 -33.3
 CYS-492   LYS-493  4.6 4.4 0.1 7.8 8.8 8.2 83.8
 LYS-493   ASN-494  4.6 4.2 -2.7 -5.7 111.5 107.7 -27.7
 ASN-494   ASN-495  8.3 8.0 3.0 3.4 95.3 96.0 -27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees