Phosphoglycerate Kinase 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-196   ALA-197  3.8 4.3 3.0 5.6 23.8 28.8 32.1
 ALA-197   LYS-198  5.4 6.2 2.7 -6.6 92.1 96.3 -10.1
 LYS-198   ALA-199  8.7 9.3 -2.6 -4.8 75.4 74.5 12.8
 ALA-199   LEU-200  8.0 8.4 14.3 -24.6 41.0 48.3 1.9
 LEU-200   GLU-201  6.9 7.2 39.3 8.2 36.0 30.4 158.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-217   ASP-218  19.3 20.4 -25.4 9.0 63.2 56.6 35.4
 ASP-218   LYS-219  16.2 16.9 -31.8 5.5 77.7 81.9 80.6
 LYS-219   ILE-220  14.8 14.8 -102.5 79.4 42.0 65.4 129.4
 ILE-220   GLN-221  15.7 17.6 36.7 -16.7 135.5 166.6 -87.1
 GLN-221   LEU-222  12.8 16.4 28.1 -28.4 61.9 103.0 -19.2
 LEU-222   ILE-223  11.1 12.9 37.4 0.1 91.6 95.1 -21.8
 ILE-223   ASN-224  13.8 14.7 0.4 10.4 155.7 155.4 -43.2
 ASN-224   ASN-225  14.2 15.3 -8.9 -12.7 72.8 72.9 11.5
 ASN-225   MET-226  10.6 11.7 14.4 -2.1 56.9 48.5 14.8
 MET-226   LEU-227  11.2 11.4 1.5 0.9 109.2 99.6 10.6
 LEU-227   ASP-228  14.6 14.7 8.0 0.2 134.2 135.3 -34.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-391   SER-392  1.9 1.7 4.2 -31.0 125.6 125.3 75.6
 SER-392   THR-393  1.8 1.6 -0.3 9.2 117.1 108.5 9.4
 THR-393   GLY-394  5.3 5.2 0.7 20.4 124.0 132.2 -30.2
 GLY-394   GLY-395  6.0 5.4 29.4 -36.8 100.5 83.9 -21.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees