D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-100   ILE-101  3.6 3.7 -0.4 5.4 154.1 153.7 6.1
 ILE-101   ALA-102  4.6 4.9 6.2 6.8 48.2 45.7 19.9
 ALA-102   SER-103  1.9 2.5 -3.9 21.9 128.2 137.9 27.3
 SER-103   ASP-104  1.2 2.1 -27.0 6.8 68.4 75.2 18.4
 ASP-104   ASN-105  4.5 4.9 7.5 1.7 60.2 58.6 19.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-231   THR-232  5.8 5.7 3.3 12.3 31.9 35.3 27.0
 THR-232   ILE-233  4.6 4.5 21.6 -28.2 58.2 58.3 5.5
 ILE-233   ALA-234  2.9 2.6 12.9 -27.6 70.7 66.1 -2.0
 ALA-234   GLN-235  1.3 1.2 12.1 25.2 22.9 36.6 64.5
 GLN-235   LEU-236  2.6 2.7 1.1 -12.7 95.9 106.1 6.2
 LEU-236   PRO-237  6.1 6.3 3.2 2.7 45.5 37.6 4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-261   PRO-262  7.1 7.6 0.6 7.6 35.6 33.3 22.6
 PRO-262   VAL-263  6.0 6.6 -6.8 13.4 141.7 135.9 2.7
 VAL-263   ASP-264  5.7 6.4 7.8 8.1 42.4 28.4 24.5
 ASP-264   LEU-265  6.0 7.2 2.8 -11.5 54.0 57.3 -14.1
 LEU-265   LYS-266  3.6 4.5 6.9 23.8 27.2 17.8 65.8
 LYS-266   LEU-267  4.1 4.4 2.7 -12.5 54.6 57.9 -4.3
 LEU-267   VAL-268  4.2 4.3 -4.0 8.2 144.3 142.4 7.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees