Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-115   ILE-116  2.7 3.1 -12.2 -6.5 44.3 49.4 41.6
 ILE-116   VAL-117  1.8 1.5 8.0 -4.2 108.8 111.7 16.6
 VAL-117   ASP-118  2.0 3.2 1.7 5.0 56.5 52.7 3.1
 ASP-118   ARG-119  3.4 4.1 -9.0 0.7 97.9 92.5 -16.3
 ARG-119   ILE-120  3.9 3.1 36.4 -54.0 141.5 141.8 20.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-156   LYS-157  11.5 11.5 12.0 -2.2 53.3 62.2 8.0
 LYS-157   ASP-158  10.6 9.9 -7.8 32.6 88.4 74.1 -20.8
 ASP-158   ASP-159  6.9 6.5 -51.5 31.6 26.2 28.9 32.7
 ASP-159   GLN-160  6.8 7.0 -96.8 94.5 81.7 90.0 27.1
 GLN-160   GLU-161  6.4 8.3 -12.9 -15.1 82.9 76.9 15.3
 GLU-161   GLU-162  5.4 7.7 20.0 -13.9 39.0 42.7 4.6
 GLU-162   THR-163  5.5 8.4 13.4 -6.7 68.1 62.9 1.2
 THR-163   VAL-164  2.5 5.1 -12.8 6.5 49.4 54.2 3.7
 VAL-164   ARG-165  0.6 3.1 -21.3 9.3 93.6 88.7 -1.7
 ARG-165   LYS-166  3.8 5.8 20.1 -15.3 39.7 32.8 7.3
 LYS-166   ARG-167  3.6 5.8 -4.0 3.8 77.7 93.9 11.0
 ARG-167   LEU-168  3.4 3.2 0.3 -4.6 124.0 122.5 8.3
 LEU-168   VAL-169  5.7 5.6 3.0 -6.5 61.1 69.5 -16.9
 VAL-169   GLU-170  8.1 8.7 8.3 -0.7 60.1 43.1 -1.7
 GLU-170   TYR-171  8.4 7.9 -3.6 -8.6 48.8 72.0 9.0
 TYR-171   HIS-172  9.6 8.6 6.4 -7.3 97.9 108.9 -1.7
 HIS-172   GLN-173  11.9 11.4 -2.8 11.5 140.6 131.4 6.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees