Atp-Dependent RNA Helicase Ddx58
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-462
VAL-463
9.9
9.5
17.3
-30.4
88.4
115.5
54.3
VAL-463
GLU-464
6.2
6.5
-151.1
127.5
97.6
85.4
-39.3
GLU-464
SER-465
5.2
3.4
-22.6
-24.6
25.8
14.6
186.2
SER-465
ARG-466
5.7
3.8
33.0
-6.2
85.9
96.0
-3.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-554
SER-555
6.1
6.1
10.8
-13.5
135.5
129.6
10.8
SER-555
GLU-556
4.3
5.0
-3.2
-26.1
21.6
14.6
105.1
GLU-556
HIS-557
5.9
6.1
18.9
-6.8
99.9
109.3
-43.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-562
ALA-563
0.3
0.2
5.2
-3.9
112.2
102.0
-3.4
ALA-563
LEU-564
3.7
3.9
-2.4
-11.1
40.6
37.9
51.8
LEU-564
ASP-565
5.1
5.1
-11.3
34.9
31.1
27.6
-86.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-604
SER-605
11.6
10.6
-149.9
-128.2
33.1
49.1
-137.1
SER-605
ASN-606
9.1
9.3
131.6
-136.5
75.5
67.1
-15.4
ASN-606
GLU-607
7.4
6.2
-33.3
75.5
128.0
74.1
64.3
GLU-607
ASN-608
4.4
4.8
24.0
-160.4
113.4
118.4
230.8
ASN-608
PRO-609
0.8
1.1
13.0
-0.2
133.2
134.1
-161.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees