Calmodulin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-27   THR-28  2.3 2.2 42.1 11.3 53.2 40.6 64.5
 THR-28   THR-29  4.4 2.5 -6.4 -10.5 95.0 118.5 -8.4
 THR-29   LYS-30  6.1 2.8 11.4 3.7 151.6 118.5 -17.1
 LYS-30   GLU-31  7.6 5.9 11.8 -29.3 127.4 134.7 27.3
 GLU-31   LEU-32  4.3 4.5 43.4 2.1 72.0 65.9 36.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-55   ASP-56  3.6 2.9 -8.6 0.9 84.9 90.3 0.7
 ASP-56   ALA-57  2.6 1.9 -53.5 -15.8 27.8 35.2 95.4
 ALA-57   ASP-58  5.3 4.0 13.1 15.0 109.0 77.4 -8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees