Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-14   PRO-15  9.8 9.9 -0.8 -2.5 71.5 66.1 -6.7
 PRO-15   TYR-16  7.2 7.2 1.6 2.7 126.5 125.5 7.1
 TYR-16   VAL-17  7.8 7.9 1.6 -4.6 80.6 77.0 -60.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-33   GLY-34  12.7 12.6 0.0 6.1 63.4 60.9 66.0
 GLY-34   TYR-35  9.2 9.1 -1.6 -3.5 126.9 126.3 -122.7
 TYR-35   CYS-36  6.9 6.8 3.0 -6.8 43.7 42.1 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-104   PHE-105  4.1 4.0 -7.5 -0.9 149.1 148.6 -233.8
 PHE-105   MET-106  5.0 5.0 2.9 4.8 56.6 57.3 56.3
 MET-106   THR-107  1.8 1.7 -7.4 -7.6 46.6 45.5 181.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-209   LEU-210  16.5 16.3 -1.1 13.4 116.4 117.2 62.1
 LEU-210   ILE-211  13.5 13.3 1.0 -8.4 21.8 27.8 -153.8
 ILE-211   ASP-212  14.2 14.4 -2.6 8.8 135.0 138.9 158.9
 ASP-212   SER-213  10.9 11.0 4.9 5.6 119.1 117.6 -195.8
 SER-213   LYS-214  7.8 7.6 10.9 7.8 67.5 71.4 280.8
 LYS-214   GLY-215  4.2 4.3 -21.8 29.7 43.3 47.5 -171.7
 GLY-215   TYR-216  1.2 1.1 -5.2 0.2 84.3 77.9 172.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees