Atp-Dependent RNA Helicase Dob1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-617   VAL-618  8.8 9.6 30.8 8.4 78.3 66.4 61.5
 VAL-618   PRO-619  8.8 9.3 -8.7 12.6 63.4 82.7 5.3
 PRO-619   VAL-620  11.7 12.7 -4.9 15.1 117.1 130.7 81.1
 VAL-620   MET-621  13.8 14.2 -15.8 9.5 163.1 154.3 -35.6
 MET-621   GLU-622  12.2 12.7 0.4 2.2 86.6 87.0 0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-723   ASN-724  30.7 29.2 8.2 24.2 76.8 57.6 65.7
 ASN-724   THR-725  33.6 31.3 90.0 19.5 31.2 14.6 508.9
 SER-730   PRO-731  34.2 32.8 26.8 9.8 102.9 78.6 -72.7
 PRO-731   VAL-732  35.0 36.2 -133.3 16.2 38.3 132.4 16.5
 VAL-732   ASN-733  34.5 34.3 -25.2 2.2 85.9 63.9 107.6
 ASN-733   LEU-734  36.5 32.1 -28.4 21.5 105.7 65.2 -29.2
 ASN-739   PRO-740  26.0 36.3 -125.9 -14.8 91.8 104.2 -469.0
 PRO-740   THR-741  23.4 33.5 129.8 12.2 25.8 141.7 353.2
 THR-741   LEU-742  23.0 33.9 -136.6 7.3 104.7 69.7 -51.2
 LEU-742   PRO-743  25.3 30.5 22.3 -1.9 12.3 132.7 21.6
 PRO-743   GLU-744  27.2 28.1 172.5 -9.9 61.4 68.4 -296.6
 GLU-744   GLY-745  26.7 25.3 -153.7 176.7 89.6 110.4 -56.4
 GLY-745   ILE-746  29.4 27.5 10.5 20.7 158.5 127.7 -164.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-869   ILE-870  6.2 7.3 0.5 1.7 14.2 30.2 5.0
 ILE-870   SER-871  7.8 9.1 0.4 13.8 74.0 89.9 7.9
 SER-871   GLU-872  7.7 8.4 23.2 -31.9 86.4 66.9 2.7
 GLU-872   SER-873  4.4 4.9 39.8 25.5 38.8 14.4 300.5
 SER-873   GLN-874  2.9 5.8 -23.1 -33.3 152.4 134.1 -228.9
 GLN-874   ALA-875  5.3 6.2 52.0 -32.2 69.6 103.4 -27.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees